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@maxplanck-ie

Max Planck Institute of Immunobiology and Epigenetics

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  1. snakepipes snakepipes Public

    Customizable workflows based on snakemake and python for the analysis of NGS data

    Python 394 87

  2. parkour parkour Public archive

    Moved to: https://github.com/maxplanck-ie/parkour2

    JavaScript 33 15

  3. parkour2 parkour2 Public

    Parkour2: Laboratory Information Management System 👩🏻‍🔬 🧬 👨🏽‍💻

    Python 31 7

  4. HiCAssembler HiCAssembler Public

    Software to assemble contigs/scaffolds into chromosomes using Hi-C data

    Python 28 4

  5. rna-seq-qc rna-seq-qc Public

    Rna-seq pipeline, From FASTQ to differential expression analysis...

    Python 20 11

  6. 10X_snakepipe 10X_snakepipe Public

    A snakemake pipeline for 10X genomics cellranger

    Python 20 4

Repositories

Showing 10 of 36 repositories
  • dissectBCL Public

    demultiplexing pipeline

    maxplanck-ie/dissectBCL’s past year of commit activity
    Python 1 2 11 0 Updated Mar 14, 2025
  • parkour2 Public

    Parkour2: Laboratory Information Management System 👩🏻‍🔬 🧬 👨🏽‍💻

    maxplanck-ie/parkour2’s past year of commit activity
    Python 31 7 1 1 Updated Mar 14, 2025
  • snakepipes Public

    Customizable workflows based on snakemake and python for the analysis of NGS data

    maxplanck-ie/snakepipes’s past year of commit activity
    Python 394 87 44 2 Updated Mar 13, 2025
  • customcontamination Public

    a list of custom contaminants.

    maxplanck-ie/customcontamination’s past year of commit activity
    0 2 0 0 Updated Mar 11, 2025
  • nanoporeReads_dataTransfer Public

    A pipeline to transfer the Nanopore reads to end users

    maxplanck-ie/nanoporeReads_dataTransfer’s past year of commit activity
    Python 0 MIT 4 32 (1 issue needs help) 0 Updated Mar 11, 2025
  • ATACofthesnake Public

    Differential accessibility calculation for bulk-ATAC seq.

    maxplanck-ie/ATACofthesnake’s past year of commit activity
    Python 2 MIT 1 9 0 Updated Mar 6, 2025
  • 10X_snakepipe Public

    A snakemake pipeline for 10X genomics cellranger

    maxplanck-ie/10X_snakepipe’s past year of commit activity
    Python 20 4 1 0 Updated Dec 19, 2024
  • BigRedButton Public

    1. Push button 2. Get results 3. Publish

    maxplanck-ie/BigRedButton’s past year of commit activity
    Python 0 0 5 1 Updated Dec 10, 2024
  • HiCAssembler Public

    Software to assemble contigs/scaffolds into chromosomes using Hi-C data

    maxplanck-ie/HiCAssembler’s past year of commit activity
    Python 28 4 19 0 Updated Sep 26, 2024
  • Rseurat Public

    Single Cell RNA-seq Course

    maxplanck-ie/Rseurat’s past year of commit activity
    R 4 GPL-3.0 0 1 0 Updated Sep 18, 2024

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