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1. CD8_scRNA_TCR_seq_analysis CD8_scRNA_TCR_seq_analysis Public

   R code and figure output for Figures 2 and S2 from Maxwell et al, 'ARID1A suppresses R-loop mediated STING-Type I Interferon pathway activation of anti-tumor immunity'.

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2. DepMap_Analysis_of_ARID1A_Mutant_Cancers DepMap_Analysis_of_ARID1A_Mutant_Cancers Public

   Demo with R code and outputs for DepMap analysis of ARID1A mutant cancers, including figure outputs for Figure S7 in Maxwell et al, 2024.

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3. TCGA_Gene_Set_Enrichment_Analysis TCGA_Gene_Set_Enrichment_Analysis Public

   R code and figure output for TCGA GSEA analysis of ARID1A Mutant vs non-mutant cancers in Figures 2 and 3 from Maxwell et al, 'ARID1A suppresses R-loop mediated STING-Type I Interferon pathway acti…

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4. RNA_Seq_Data_Visualization_with_R RNA_Seq_Data_Visualization_with_R Public

   Demo on RNA-seq data visualization.

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5. Survival_analyses_with_R Survival_analyses_with_R Public

   Demo of how to perform univariate and multivariate survival analyses with R.

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6. ARID1A_Cell_code ARID1A_Cell_code Public

   R codes and shell scripts for core bioinformatic analyses in Maxwell et al, 2024 Cell paper 'ARID1A suppresses R-loop mediated STING-Type I Interferon pathway activation of anti-tumor immunity '