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@merenlab

Meren Lab

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  1. anvio anvio Public

    An analysis and visualization platform for 'omics data

    Python 457 146

  2. oligotyping oligotyping Public

    Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa

    Python 39 22

  3. illumina-utils illumina-utils Public

    A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).

    Python 91 31

Repositories

Showing 10 of 22 repositories
  • anvio Public

    An analysis and visualization platform for 'omics data

    merenlab/anvio’s past year of commit activity
    Python 457 GPL-3.0 146 160 15 Updated Mar 13, 2025
  • rosalind Public

    A simple Meren Lab bot to notify our Slack regarding our jobs on the HPC System ROSA at UOL

    merenlab/rosalind’s past year of commit activity
    Python 0 0 0 0 Updated Mar 13, 2025
  • merenlab.org Public

    Web content for Meren Lab

    merenlab/merenlab.org’s past year of commit activity
    HTML 11 MIT 31 2 0 Updated Mar 11, 2025
  • anvio.org Public

    The anvi'o community web page

    merenlab/anvio.org’s past year of commit activity
    HTML 4 12 2 1 Updated Mar 10, 2025
  • clusterize Public Forked from ekiefl/clusterize

    The most basic SLURM wrapper

    merenlab/clusterize’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Feb 4, 2025
  • reads-for-assembly Public

    Simulate metagenomic short reads from one or more populations.

    merenlab/reads-for-assembly’s past year of commit activity
    Python 26 GPL-2.0 4 0 0 Updated Jan 29, 2025
  • public-marine-omics-metadata Public

    Semi-curated metadata for marine metagenomes (and other 'omics data types)

    merenlab/public-marine-omics-metadata’s past year of commit activity
    R 1 0 4 0 Updated Sep 18, 2024
  • oligotyping Public

    Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa

    merenlab/oligotyping’s past year of commit activity
    Python 39 GPL-2.0 22 5 0 Updated Jun 24, 2024
  • illumina-utils Public

    A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).

    merenlab/illumina-utils’s past year of commit activity
    Python 91 GPL-2.0 31 7 1 Updated Dec 16, 2023
  • world-map-r Public

    A simple script to display stuff on a world map with R and ggplot

    merenlab/world-map-r’s past year of commit activity
    R 17 GPL-3.0 4 1 0 Updated Sep 15, 2023
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