Merge pull request #764 from monarch-initiative/fix-ordo-mappings

Fix ORDO mappings query
monarch-initiative · Feb 8, 2025 · a73277c · a73277c
2 parents db2c5f9 + 9c164aa
commit a73277c
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diff --git a/src/ontology/mondo-ingest.Makefile b/src/ontology/mondo-ingest.Makefile
@@ -91,7 +91,8 @@ $(COMPONENTSDIR)/ordo.owl: $(TMPDIR)/ordo_relevant_signature.txt config/properti
 			--update ../sparql/ordo-construct-subclass-from-part-of.ru \
 			--update ../sparql/ordo-construct-subsets.ru \
 			--update ../sparql/ordo-construct-d2g.ru \
-			--update ../sparql/ordo-replace-annotation-based-mappings.ru \
+		query --update ../sparql/ordo-replace-annotation-based-mappings.ru \
+		remove --term oboInOwl:hasDbXref --axioms "annotation" \
 		remove -T $(TMPDIR)/ordo_relevant_signature.txt --select complement --select "classes individuals" --trim false \
 		remove -T config/properties.txt --select complement --select properties --trim true \
 		annotate --ontology-iri $(URIBASE)/mondo/sources/ordo.owl --version-iri $(URIBASE)/mondo/sources/$(TODAY)/ordo.owl -o $@; fi