Update OMIM Genes References in Mondo #1
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| name: Update OMIM Genes References in Mondo | |
| on: | |
| # schedule: | |
| # - cron: '0 14 * * 1' | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| container: obolibrary/odkfull:v1.5.4 | |
| steps: | |
| - name: Checkout main branch | |
| uses: actions/checkout@v4 | |
| - name: Update OMIM gene references | |
| run: | | |
| cd src/ontology | |
| make GITHUB_ACTION=true IMP=false PAT=false update-omim-genes -B | |
| - name: QC | |
| run: cd src/ontology; make GITHUB_ACTION=true IMP=false PAT=false test -B | |
| continue-on-error: true # Allow QC to fail but continue | |
| - name: Create Pull Request | |
| uses: peter-evans/create-pull-request@v5 | |
| with: | |
| branch-suffix: short-commit-hash | |
| labels: automated | |
| body: "Update OMIM gene references." | |
| title: "Update OMIM gene references" | |
| base: ${{ github.head_ref }} | |
| branch: "omim_gene_references" | |
| token: ${{ secrets.GH_TOKEN }} | |
| #reviewers: "sabrinatoro" |