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remove gene associations from obsolete classes
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@twhetzel
twhetzel committed Jan 24, 2025
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Showing 1 changed file with 0 additions and 14 deletions.
14 changes: 0 additions & 14 deletions src/ontology/mondo-edit.obo
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Expand Up @@ -179615,7 +179615,6 @@ xref: GARD:7802 {source="MONDO:obsoleteEquivalent", source="MONDO:GARD"}
xref: MESH:C566033 {source="MONDO:obsoleteEquivalent"}
xref: OMIM:190351 {source="MONDO:obsoleteEquivalent"}
xref: Orphanet:77258 {source="OMIM:190351"}
relationship: has_material_basis_in_germline_mutation_in http://identifiers.org/hgnc/12340 {source="OMIM:190351"} ! TRPS1
property_value: IAO:0000231 OMO:0001000 {source="MONDO:excludeHistoricalDisease"}
property_value: IAO:0000233 "https://github.com/monarch-initiative/mondo/issues/4948" xsd:anyURI
property_value: IAO:0000233 "https://github.com/monarch-initiative/mondo/issues/6749" xsd:anyURI
Expand Down Expand Up @@ -202601,7 +202600,6 @@ xref: Orphanet:247651 {source="MONDO:obsoleteEquivalent", source="DOID:0110914",
xref: Orphanet:436 {source="OMIM:241500"}
xref: SCTID:55236002 {source="MONDO:obsoleteEquivalent"}
relationship: curated_content_resource https://search.clinicalgenome.org/kb/conditions/MONDO:0009427 {source="MONDO:CLINGEN"}
relationship: has_material_basis_in_germline_mutation_in http://identifiers.org/hgnc/438 {source="OMIM:241500"} ! ALPL
property_value: IAO:0000231 OMO:0001000
property_value: IAO:0000233 "https://github.com/monarch-initiative/mondo/issues/2906" xsd:anyURI
property_value: IAO:0000233 "https://github.com/monarch-initiative/mondo/issues/4948" xsd:anyURI
Expand Down Expand Up @@ -202631,7 +202629,6 @@ xref: Orphanet:247667 {source="MONDO:obsoleteEquivalent", source="DOID:0110915",
xref: Orphanet:436 {source="OMIM:241510"}
xref: SCTID:30174008 {source="MONDO:obsoleteEquivalent"}
relationship: curated_content_resource https://search.clinicalgenome.org/kb/conditions/MONDO:0009428 {source="MONDO:CLINGEN"}
relationship: has_material_basis_in_germline_mutation_in http://identifiers.org/hgnc/438 {source="OMIM:241510"} ! ALPL
property_value: IAO:0000231 OMO:0001000
property_value: IAO:0000233 "https://github.com/monarch-initiative/mondo/issues/2906" xsd:anyURI
property_value: seeAlso "https://rarediseases.info.nih.gov/diseases/8735/childhood-hypophosphatasia" xsd:anyURI {source="GARD:0008735"}
Expand Down Expand Up @@ -228783,7 +228780,6 @@ xref: DOID:0112124 {source="MONDO:obsoleteEquivalent"}
xref: MESH:C567595 {source="MONDO:obsoleteEquivalent"}
xref: OMIM:300455 {source="Orphanet:247522", source="MONDO:obsoleteEquivalent", source="Orphanet:247522/e"}
xref: Orphanet:247522 {source="MONDO:obsoleteEquivalent", source="OMIM:300455"}
relationship: has_material_basis_in_germline_mutation_in http://identifiers.org/hgnc/10295 {source="OMIM:300455"} ! RPGR
property_value: IAO:0000231 OMO:0001000
property_value: IAO:0000233 "https://github.com/monarch-initiative/mondo/issues/3898" xsd:anyURI
is_obsolete: true
Expand Down Expand Up @@ -255120,7 +255116,6 @@ synonym: "GLC1F" RELATED ABBREVIATION [MONDO:Lexical]
xref: MESH:C566383 {source="MONDO:obsoleteEquivalent"}
xref: OMIM:603383 {source="MONDO:obsoleteEquivalent"}
relationship: curated_content_resource https://search.clinicalgenome.org/kb/conditions/MONDO:0011311 {source="MONDO:CLINGEN"}
relationship: has_material_basis_in_germline_mutation_in http://identifiers.org/hgnc/17185 {source="OMIM:603383"} ! ASB10
property_value: IAO:0000231 OMO:0001000 {source="MONDO:excludeGeneticCarrier"}
property_value: IAO:0000233 "https://github.com/monarch-initiative/mondo/issues/4936" xsd:anyURI
is_obsolete: true
Expand Down Expand Up @@ -278078,7 +278073,6 @@ xref: DOID:0111504 {source="MONDO:obsoleteEquivalent"}
xref: MESH:C563755 {source="MONDO:obsoleteEquivalent"}
xref: OMIM:609265 {source="MONDO:obsoleteEquivalent"}
xref: Orphanet:524 {source="OMIM:609265"}
relationship: has_material_basis_in_germline_mutation_in http://identifiers.org/hgnc/16627 {source="OMIM:609265"} ! CHEK2
property_value: IAO:0000231 OMO:0001000 {source="MONDO:excludeHistoricalDisease"}
property_value: IAO:0000233 "https://github.com/monarch-initiative/mondo/issues/6260" xsd:anyURI
property_value: IAO:0000233 "https://github.com/monarch-initiative/mondo/issues/6269" xsd:anyURI
Expand Down Expand Up @@ -280960,7 +280954,6 @@ synonym: "WDR36 open-angle glaucoma" EXACT [MONDO:design_pattern, MONDO:patterns
xref: MESH:C563692 {source="MONDO:obsoleteEquivalent"}
xref: OMIM:609887 {source="MONDO:obsoleteEquivalent"}
relationship: curated_content_resource https://search.clinicalgenome.org/kb/conditions/MONDO:0012357 {source="MONDO:CLINGEN"}
relationship: has_material_basis_in_germline_mutation_in http://identifiers.org/hgnc/30696 {source="OMIM:609887"} ! WDR36
property_value: IAO:0000231 OMO:0001000 {source="MONDO:excludeGeneticCarrier"}
property_value: IAO:0000233 "https://github.com/monarch-initiative/mondo/issues/4936" xsd:anyURI
is_obsolete: true
Expand Down Expand Up @@ -288168,7 +288161,6 @@ synonym: "glaucoma 1, open angle, H" EXACT [MONDO:Lexical]
synonym: "GLC1H" EXACT ABBREVIATION [MONDO:Lexical]
xref: MESH:C566976 {source="MONDO:obsoleteEquivalent"}
xref: OMIM:611276 {source="MONDO:obsoleteEquivalent"}
relationship: has_material_basis_in_germline_mutation_in http://identifiers.org/hgnc/3218 {source="OMIM:611276"} ! EFEMP1
property_value: IAO:0000231 OMO:0001000 {source="MONDO:excludeGeneticCarrier"}
property_value: IAO:0000233 "https://github.com/monarch-initiative/mondo/issues/4936" xsd:anyURI
is_obsolete: true
Expand Down Expand Up @@ -333087,7 +333079,6 @@ synonym: "ALPHA-fetoprotein deficiency" RELATED [MONDO:Lexical]
xref: MESH:C566300 {source="MONDO:obsoleteEquivalent"}
xref: OMIM:615969 {source="MONDO:obsoleteEquivalent", source="Orphanet:168612", source="Orphanet:168612/e"}
xref: Orphanet:168612 {source="MONDO:obsoleteEquivalent", source="OMIM:615969"}
relationship: has_material_basis_in_germline_mutation_in http://identifiers.org/hgnc/317 {source="OMIM:615969"} ! AFP
property_value: IAO:0000231 OMO:0001000
property_value: IAO:0000233 "https://github.com/monarch-initiative/mondo/issues/181" xsd:anyURI
is_obsolete: true
Expand Down Expand Up @@ -340400,7 +340391,6 @@ synonym: "HMLR2" RELATED ABBREVIATION [MONDO:Lexical]
synonym: "peroxisome biogenesis disorder 4C" RELATED []
xref: DOID:0080624 {source="MONDO:obsoleteEquivalent"}
xref: OMIM:616617 {source="MONDO:obsoleteEquivalent"}
relationship: has_material_basis_in_germline_mutation_in http://identifiers.org/hgnc/8859 {source="OMIM:616617"} ! PEX6
property_value: IAO:0000231 OMO:0001000
property_value: IAO:0000233 "https://github.com/monarch-initiative/mondo/issues/3222" xsd:anyURI
is_obsolete: true
Expand Down Expand Up @@ -342265,7 +342255,6 @@ synonym: "Prembl" RELATED []
synonym: "PREMBL1" EXACT ABBREVIATION []
synonym: "TLE6 preimplantation embryonic lethality" EXACT [MONDO:design_pattern, MONDO:patterns/disease_series_by_gene]
xref: OMIM:616814 {source="MONDO:obsoleteEquivalent"}
relationship: has_material_basis_in_germline_mutation_in http://identifiers.org/hgnc/30788 {source="OMIM:616814"} ! TLE6
property_value: IAO:0000231 OMO:0001000 {source="MONDO:excludePhenotype"}
property_value: IAO:0000233 "https://github.com/monarch-initiative/mondo/issues/4521" xsd:anyURI
property_value: IAO:0000233 "https://github.com/monarch-initiative/mondo/issues/5091" xsd:anyURI
Expand Down Expand Up @@ -346781,7 +346770,6 @@ synonym: "preimplantation embryonic lethality caused by mutation in PADI6" EXACT
synonym: "preimplantation embryonic lethality type 2" EXACT [MONDORULE:1]
synonym: "PREMBL2" EXACT ABBREVIATION []
xref: OMIM:617234 {source="MONDO:obsoleteEquivalent"}
relationship: has_material_basis_in_germline_mutation_in http://identifiers.org/hgnc/20449 {source="OMIM:617234"} ! PADI6
property_value: IAO:0000231 OMO:0001000 {source="MONDO:excludePhenotype"}
property_value: IAO:0000233 "https://github.com/monarch-initiative/mondo/issues/5091" xsd:anyURI
is_obsolete: true
Expand Down Expand Up @@ -492498,7 +492486,6 @@ synonym: "peroxisome biogenesis disorder 1C" RELATED []
xref: DOID:0080623 {source="MONDO:obsoleteEquivalent"}
xref: OMIM:234580 {source="MONDO:obsoleteEquivalent"}
xref: Orphanet:3220 {source="OMIM:234580"}
relationship: has_material_basis_in_germline_mutation_in http://identifiers.org/hgnc/8850 {source="OMIM:234580"} ! PEX1
property_value: IAO:0000231 OMO:0001000
property_value: IAO:0000233 "https://github.com/monarch-initiative/mondo/issues/3222" xsd:anyURI
is_obsolete: true
Expand Down Expand Up @@ -525749,7 +525736,6 @@ synonym: "blood group--Lutheran INHIBITOR" RELATED []
synonym: "dominant 50U (A-B-) phenotype" RELATED []
synonym: "INLU" RELATED ABBREVIATION []
xref: OMIM:111150 {source="MONDO:obsoleteEquivalent"}
relationship: has_material_basis_in_germline_mutation_in http://identifiers.org/hgnc/6345 {source="OMIM:111150"} ! KLF1
is_obsolete: true

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