- Update pdc_client docker to version 2.0.1
- Add params.skyline.fasta option so a separate fasta file can be used for DIA search and skyline import
- When files are downloaded from the PDC, name the Skyline document with the PDC study name if params.skyline.document_name is not specified.
- Update minimum version of nextflow to 23.04.2 so that splitJson channel operator can be used.
Use with -r v2.6.1