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  1. JaBbA JaBbA Public

    MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.

    R 56 26

  2. gGnome gGnome Public

    R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework

    R 39 20

  3. fishHook fishHook Public

    R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after correcting for genomic covariates.

    R 27 9

  4. gGnome.js gGnome.js Public

    JavaScript 26 5

  5. gTrack gTrack Public

    R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework

    R 16 12

  6. dryclean dryclean Public

    Irons out wrinkles in noisy coverage data using robust PCA

    R 13 14

Repositories

Showing 10 of 36 repositories
  • skilift Public

    An R interface for loading and modifying PGV datafiles

    mskilab-org/skilift’s past year of commit activity
    R 0 3 4 0 Updated Feb 13, 2025
  • gOS Public

    Genomic case report

    mskilab-org/gOS’s past year of commit activity
    JavaScript 0 BSD-3-Clause 0 7 0 Updated Feb 13, 2025
  • multiplicity Public
    mskilab-org/multiplicity’s past year of commit activity
    R 0 1 0 0 Updated Feb 12, 2025
  • chromunity Public

    Discovery of communities in Pore-C concatemers

    mskilab-org/chromunity’s past year of commit activity
    R 12 4 6 0 Updated Feb 12, 2025
  • skitools Public

    General purpose mskilab R tools

    mskilab-org/skitools’s past year of commit activity
    R 6 8 0 1 Updated Feb 8, 2025
  • JaBbA Public

    MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.

    mskilab-org/JaBbA’s past year of commit activity
    R 56 MIT 26 13 1 Updated Feb 8, 2025
  • gUtils Public

    Utility functions to extend and optimize GenomicRanges functionality.

    mskilab-org/gUtils’s past year of commit activity
    R 9 GPL-2.0 10 6 3 Updated Feb 8, 2025
  • nf-gos Public

    End to end cancer genomics pipeline

    mskilab-org/nf-gos’s past year of commit activity
    Nextflow 1 MIT 1 7 0 Updated Feb 4, 2025
  • GxG Public

    Scalable GenomicRanges based class for storing, manipulating, and querying genomic matrices and pairwise features.

    mskilab-org/GxG’s past year of commit activity
    R 7 MIT 6 1 0 Updated Jan 30, 2025
  • readsupport Public

    Computes read support for arbitrary junctions and contigs for single, paired-end, and linked reads

    mskilab-org/readsupport’s past year of commit activity
    R 1 MIT 2 0 0 Updated Jan 29, 2025

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