Skip to content

PoPS 1.0.0
Compare
Choose a tag to compare
@wenzeslaus wenzeslaus released this 11 Sep 19:45
v1.0.0
035bee8
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Verified
Learn about vigilant mode.

This is version 1.0.0 of the PoPS Core C++ library and its interfaces: rpops R package and r.pops.spread GRASS GIS module. The release of r.pops.spread includes:

  • Susceptible-infected (SI) and susceptible-exposed-infected (SEI) host phases (model_type, latency_period),
  • Host mortality tracking (mortality_rate, mortality_series),
  • Host removal and pesticide application treatments (treatments, treatment_date, treatment_length),
  • Host resistance based on pesticide application treatments (treatment_length > 0),
  • Treatments applied only to a ratio of hosts (treatment_application),
  • Yearly pest removal based on lethal temperature (lethal_temperature, lethal_month),
  • Two different dispersal kernels (natural_dispersal_kernel, anthropogenic_dispersal_kernel),
  • Cauchy and exponential radial dispersal kernels,
  • Seasonal spread (seasonality in months),
  • Multiple stochastic runs (runs),
  • Parallel execution of multiple runs (nprocs),
  • Output of average infected hosts across multiple runs and for single stochastic run (average, average_series, single_series),
  • Standard deviations for output averages (stddev, stddev_series),
  • Infection probability output in percent (probability, probability_series),
  • Spread rate measurement (spread_rate_output).
Assets 2
Loading