Skip to content
@nextstrain

Nextstrain

Real-time tracking of pathogen evolution

Pinned Loading

  1. ncov ncov Public

    Nextstrain build for SARS-CoV-2

    Python 1.4k 404

  2. augur augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 268 128

  3. auspice auspice Public

    Web app for visualizing pathogen evolution

    JavaScript 298 163

Repositories

Showing 10 of 94 repositories
  • ebola Public

    Nextstrain build for Ebola virus

    nextstrain/ebola’s past year of commit activity
    Python 3 9 4 3 Updated Feb 14, 2025
  • avian-flu Public

    Nextstrain build for avian influenza viruses

    nextstrain/avian-flu’s past year of commit activity
    Python 23 9 12 9 Updated Feb 14, 2025
  • cli Public

    The Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize pathogen builds and access Nextstrain components like Augur and Auspice across computing environments such as Docker, Conda, and AWS Batch.

    nextstrain/cli’s past year of commit activity
    Python 27 MIT 20 62 5 Updated Feb 13, 2025
  • measles Public

    Nextstrain build for measles virus

    nextstrain/measles’s past year of commit activity
    Python 1 6 5 5 Updated Feb 13, 2025
  • fauna Public

    RethinkDB database to support real-time virus analysis

    nextstrain/fauna’s past year of commit activity
    Python 33 AGPL-3.0 13 19 10 Updated Feb 13, 2025
  • dengue Public

    Nextstrain build for dengue virus

    nextstrain/dengue’s past year of commit activity
    Python 8 12 11 (1 issue needs help) 0 Updated Feb 13, 2025
  • nextstrain.org Public

    The Nextstrain website

    nextstrain/nextstrain.org’s past year of commit activity
    JavaScript 93 AGPL-3.0 49 69 8 Updated Feb 13, 2025
  • ncov-clades-schema Public

    Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain

    nextstrain/ncov-clades-schema’s past year of commit activity
    JavaScript 12 8 4 3 Updated Feb 13, 2025
  • docker-base Public

    Docker image build for nextstrain/base

    nextstrain/docker-base’s past year of commit activity
    Shell 12 6 12 5 Updated Feb 13, 2025
  • augur Public

    Pipeline components for real-time phylodynamic analysis

    nextstrain/augur’s past year of commit activity
    Python 268 AGPL-3.0 128 220 (1 issue needs help) 35 Updated Feb 13, 2025
View all repositories

Top languages

Loading…

Most used topics

Loading…