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reintroduce nf-core lint support + update all modules #800

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reintroduce nf-core lint support + update all modules

reintroduce nf-core lint support + update all modules #800

Run time

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Job Run time
Run nf-test with pipeline_default-24.04.0
3m 1s
Run nf-test with pipeline_callers-24.04.0
3m 1s
Run nf-test with pipeline_variations-24.04.0
2m 57s
Run nf-test with pipeline_variations2-24.04.0
3m 1s
Run nf-test with pipeline_gvcfs-24.04.0
2m 58s
Run nf-test with cram_call_genotype_gatk4-24.04.0
3m 3s
Run nf-test with cram_call_vardictjava-24.04.0
3m 0s
Run nf-test with cram_prepare_samtools_bedtools-24.04.0
3m 2s
Run nf-test with input_split_bedtools-24.04.0
2m 55s
Run nf-test with vcf_annotation-24.04.0
2m 58s
Run nf-test with vcf_extract_relate_somalier-24.04.0
2m 55s
Run nf-test with vcf_ped_rtgtools-24.04.0
3m 2s
Run nf-test with vcf_upd_updio-24.04.0
3m 1s
Run nf-test with vcf_validate_small_variants-24.04.0
2m 45s
Run nf-test with pipeline_default-latest-everything
1s
Run nf-test with pipeline_callers-latest-everything
2m 27s
Run nf-test with pipeline_variations-latest-everything
1s
Run nf-test with pipeline_variations2-latest-everything
2m 21s
Run nf-test with pipeline_gvcfs-latest-everything
1s
Run nf-test with cram_call_genotype_gatk4-latest-everything
3m 0s
Run nf-test with cram_call_vardictjava-latest-everything
3m 0s
Run nf-test with cram_prepare_samtools_bedtools-latest-everything
2m 57s
Run nf-test with input_split_bedtools-latest-everything
2m 53s
Run nf-test with vcf_annotation-latest-everything
1s
Run nf-test with vcf_extract_relate_somalier-latest-everything
1s
Run nf-test with vcf_ped_rtgtools-latest-everything
1s
Run nf-test with vcf_upd_updio-latest-everything
1s
Run nf-test with vcf_validate_small_variants-latest-everything
1s
58m 25s