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Test gatk 4.6 #821

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Test gatk 4.6

Test gatk 4.6 #821

Triggered via pull request September 10, 2024 12:34
@matthdsmmatthdsm
synchronize #194
test/gatk-4.6
Status Success
Total duration 21m 28s
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ci.yml

on: pull_request
Matrix: test_all
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28 errors and 56 warnings
Run nf-test with input_split_bedtools-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with vcf_extract_relate_somalier-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with vcf_annotation-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with cram_prepare_samtools_bedtools-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with vcf_ped_rtgtools-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with pipeline_gvcfs-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with pipeline_default-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with vcf_validate_small_variants-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with cram_call_vardictjava-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with input_split_bedtools-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with cram_call_genotype_gatk4-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with cram_call_vardictjava-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with vcf_extract_relate_somalier-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with pipeline_callers-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with vcf_ped_rtgtools-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with vcf_upd_updio-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with vcf_annotation-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with pipeline_default-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with pipeline_gvcfs-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with pipeline_callers-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with cram_call_genotype_gatk4-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with pipeline_variations-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with cram_prepare_samtools_bedtools-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with pipeline_variations2-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with vcf_upd_updio-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with pipeline_variations-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with pipeline_variations2-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with vcf_validate_small_variants-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with input_split_bedtools-24.04.0
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run nf-test with input_split_bedtools-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with vcf_extract_relate_somalier-24.04.0
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run nf-test with vcf_extract_relate_somalier-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with vcf_annotation-24.04.0
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run nf-test with vcf_annotation-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with cram_prepare_samtools_bedtools-24.04.0
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run nf-test with cram_prepare_samtools_bedtools-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with vcf_ped_rtgtools-24.04.0
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run nf-test with vcf_ped_rtgtools-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with pipeline_gvcfs-24.04.0
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run nf-test with pipeline_gvcfs-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with pipeline_default-24.04.0
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run nf-test with pipeline_default-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with vcf_validate_small_variants-24.04.0
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run nf-test with vcf_validate_small_variants-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with cram_call_vardictjava-24.04.0
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run nf-test with cram_call_vardictjava-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with input_split_bedtools-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run nf-test with input_split_bedtools-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with cram_call_genotype_gatk4-24.04.0
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run nf-test with cram_call_genotype_gatk4-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with cram_call_vardictjava-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run nf-test with cram_call_vardictjava-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with vcf_extract_relate_somalier-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run nf-test with vcf_extract_relate_somalier-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with pipeline_callers-24.04.0
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run nf-test with pipeline_callers-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with vcf_ped_rtgtools-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run nf-test with vcf_ped_rtgtools-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with vcf_upd_updio-24.04.0
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run nf-test with vcf_upd_updio-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with vcf_annotation-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run nf-test with vcf_annotation-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with pipeline_default-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run nf-test with pipeline_default-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with pipeline_gvcfs-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run nf-test with pipeline_gvcfs-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with pipeline_callers-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run nf-test with pipeline_callers-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with cram_call_genotype_gatk4-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run nf-test with cram_call_genotype_gatk4-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with pipeline_variations-24.04.0
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run nf-test with pipeline_variations-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with cram_prepare_samtools_bedtools-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run nf-test with cram_prepare_samtools_bedtools-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with pipeline_variations2-24.04.0
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run nf-test with pipeline_variations2-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with vcf_upd_updio-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run nf-test with vcf_upd_updio-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with pipeline_variations-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run nf-test with pipeline_variations-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with pipeline_variations2-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run nf-test with pipeline_variations2-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with vcf_validate_small_variants-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run nf-test with vcf_validate_small_variants-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23