Fix wes validation + some general fixes #862
nvnieuwkAnnotations
48 errors and 20 warnings
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Run nf-test with pipeline_default-latest-everything
Canceling since a higher priority waiting request for 'nf-core CI-204' exists
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Run nf-test with vcf_ped_rtgtools-latest-everything
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Run nf-test with vcf_upd_updio-latest-everything
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Run nf-test with vcf_validate_small_variants-latest-everything
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Run nf-test with vcf_annotation-latest-everything
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Run nf-test with pipeline_gvcfs-latest-everything
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Run nf-test with vcf_extract_relate_somalier-latest-everything
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Run nf-test with pipeline_variations2-latest-everything
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Run nf-test with pipeline_gvcfs-24.04.0
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Run nf-test with pipeline_gvcfs-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with cram_call_genotype_gatk4-24.04.0
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Run nf-test with cram_call_genotype_gatk4-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with cram_call_genotype_gatk4-latest-everything
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Run nf-test with cram_call_genotype_gatk4-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_callers-24.04.0
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Run nf-test with vcf_annotation-24.04.0
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Run nf-test with pipeline_callers-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with vcf_annotation-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with vcf_upd_updio-24.04.0
Canceling since a higher priority waiting request for 'nf-core CI-204' exists
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Run nf-test with vcf_upd_updio-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with vcf_validate_small_variants-24.04.0
Canceling since a higher priority waiting request for 'nf-core CI-204' exists
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Run nf-test with vcf_validate_small_variants-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with cram_call_vardictjava-latest-everything
Canceling since a higher priority waiting request for 'nf-core CI-204' exists
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Run nf-test with cram_call_vardictjava-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with vcf_extract_relate_somalier-24.04.0
Canceling since a higher priority waiting request for 'nf-core CI-204' exists
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Run nf-test with vcf_extract_relate_somalier-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with input_split_bedtools-24.04.0
Canceling since a higher priority waiting request for 'nf-core CI-204' exists
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Run nf-test with input_split_bedtools-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_default-24.04.0
Canceling since a higher priority waiting request for 'nf-core CI-204' exists
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Run nf-test with pipeline_default-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_variations-24.04.0
Canceling since a higher priority waiting request for 'nf-core CI-204' exists
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Run nf-test with pipeline_variations-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with vcf_ped_rtgtools-24.04.0
Canceling since a higher priority waiting request for 'nf-core CI-204' exists
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Run nf-test with vcf_ped_rtgtools-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_variations-latest-everything
Canceling since a higher priority waiting request for 'nf-core CI-204' exists
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Run nf-test with pipeline_variations-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with input_split_bedtools-latest-everything
Canceling since a higher priority waiting request for 'nf-core CI-204' exists
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Run nf-test with input_split_bedtools-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_callers-latest-everything
Canceling since a higher priority waiting request for 'nf-core CI-204' exists
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Run nf-test with pipeline_callers-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with cram_prepare_samtools_bedtools-latest-everything
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Run nf-test with cram_prepare_samtools_bedtools-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with cram_prepare_samtools_bedtools-24.04.0
Canceling since a higher priority waiting request for 'nf-core CI-204' exists
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Run nf-test with cram_prepare_samtools_bedtools-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with cram_call_vardictjava-24.04.0
Canceling since a higher priority waiting request for 'nf-core CI-204' exists
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Run nf-test with cram_call_vardictjava-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_variations2-24.04.0
Canceling since a higher priority waiting request for 'nf-core CI-204' exists
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Run nf-test with pipeline_variations2-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_gvcfs-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with cram_call_genotype_gatk4-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with cram_call_genotype_gatk4-latest-everything
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Run nf-test with pipeline_callers-24.04.0
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Run nf-test with vcf_annotation-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with vcf_upd_updio-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with vcf_validate_small_variants-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with cram_call_vardictjava-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with vcf_extract_relate_somalier-24.04.0
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Run nf-test with input_split_bedtools-24.04.0
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Run nf-test with pipeline_default-24.04.0
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Run nf-test with pipeline_variations-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with vcf_ped_rtgtools-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_variations-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with input_split_bedtools-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_callers-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with cram_prepare_samtools_bedtools-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with cram_prepare_samtools_bedtools-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with cram_call_vardictjava-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_variations2-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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