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Fix wes validation + some general fixes #866

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Fix wes validation + some general fixes

Fix wes validation + some general fixes #866

Run time

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Job Run time
Run nf-test with pipeline_default-24.04.0
4m 36s
Run nf-test with pipeline_callers-24.04.0
4m 58s
Run nf-test with pipeline_variations-24.04.0
5m 0s
Run nf-test with pipeline_variations2-24.04.0
4m 58s
Run nf-test with pipeline_gvcfs-24.04.0
4m 38s
Run nf-test with cram_call_genotype_gatk4-24.04.0
4m 59s
Run nf-test with cram_call_vardictjava-24.04.0
4m 59s
Run nf-test with cram_prepare_samtools_bedtools-24.04.0
4m 59s
Run nf-test with input_split_bedtools-24.04.0
2m 38s
Run nf-test with vcf_annotation-24.04.0
3m 36s
Run nf-test with vcf_extract_relate_somalier-24.04.0
3m 18s
Run nf-test with vcf_ped_rtgtools-24.04.0
4m 57s
Run nf-test with vcf_upd_updio-24.04.0
4m 57s
Run nf-test with vcf_validate_small_variants-24.04.0
3m 9s
Run nf-test with pipeline_default-latest-everything
1m 14s
Run nf-test with pipeline_callers-latest-everything
3m 1s
Run nf-test with pipeline_variations-latest-everything
2m 56s
Run nf-test with pipeline_variations2-latest-everything
1m 41s
Run nf-test with pipeline_gvcfs-latest-everything
1m 33s
Run nf-test with cram_call_genotype_gatk4-latest-everything
4m 57s
Run nf-test with cram_call_vardictjava-latest-everything
4m 41s
Run nf-test with cram_prepare_samtools_bedtools-latest-everything
3m 51s
Run nf-test with input_split_bedtools-latest-everything
4m 1s
Run nf-test with vcf_annotation-latest-everything
55s
Run nf-test with vcf_extract_relate_somalier-latest-everything
26s
Run nf-test with vcf_ped_rtgtools-latest-everything
1s
Run nf-test with vcf_upd_updio-latest-everything
1s
Run nf-test with vcf_validate_small_variants-latest-everything
1s
1h 31m 1s