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Rework nf-test #728

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Rework nf-test

Rework nf-test #728

Triggered via pull request March 27, 2024 16:21
@nvnieuwknvnieuwk
synchronize #169
rework-nf-test
Status Failure
Total duration 5m 13s
Artifacts 1

ci.yml

on: pull_request
Matrix: test_all
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59 errors and 25 warnings
Run nf-test with vcf_extract_relate_somalier-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with vcf_validate_small_variants-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with input_split_bedtools-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with vcf_ped_rtgtools-23.04.0
Process completed with exit code 1.
Run nf-test with vcf_ped_rtgtools-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with pipeline_default-latest-everything
The job was canceled because "_23_04_0_vcf_ped_rtgtools" failed.
Run nf-test with vcf_ped_rtgtools-latest-everything
The job was canceled because "_23_04_0_vcf_ped_rtgtools" failed.
Run nf-test with pipeline_gvcfs-latest-everything
The job was canceled because "_23_04_0_vcf_ped_rtgtools" failed.
Run nf-test with vcf_annotation-latest-everything
The job was canceled because "_23_04_0_vcf_ped_rtgtools" failed.
Run nf-test with vcf_validate_small_variants-latest-everything
The job was canceled because "_23_04_0_vcf_ped_rtgtools" failed.
Run nf-test with vcf_extract_relate_somalier-latest-everything
The job was canceled because "_23_04_0_vcf_ped_rtgtools" failed.
Run nf-test with vcf_upd_updio-latest-everything
The job was canceled because "_23_04_0_vcf_ped_rtgtools" failed.
Run nf-test with vcf_upd_updio-23.04.0
The job was canceled because "_23_04_0_vcf_ped_rtgtools" failed.
Run nf-test with vcf_upd_updio-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with vcf_upd_updio-23.04.0
The operation was canceled.
Run nf-test with vcf_upd_updio-23.04.0
Process completed with exit code 1.
Run nf-test with pipeline_gvcfs-23.04.0
The job was canceled because "_23_04_0_vcf_ped_rtgtools" failed.
Run nf-test with pipeline_gvcfs-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with cram_prepare_samtools_bedtools-latest-everything
The job was canceled because "_23_04_0_vcf_ped_rtgtools" failed.
Run nf-test with cram_prepare_samtools_bedtools-latest-everything
The operation was canceled.
Run nf-test with cram_prepare_samtools_bedtools-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with pipeline_default-23.04.0
The job was canceled because "_23_04_0_vcf_ped_rtgtools" failed.
Run nf-test with pipeline_default-23.04.0
The operation was canceled.
Run nf-test with pipeline_default-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with input_split_bedtools-latest-everything
The job was canceled because "_23_04_0_vcf_ped_rtgtools" failed.
Run nf-test with input_split_bedtools-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with pipeline_variations-latest-everything
The job was canceled because "_23_04_0_vcf_ped_rtgtools" failed.
Run nf-test with pipeline_variations-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with cram_call_vardictjava-latest-everything
The job was canceled because "_23_04_0_vcf_ped_rtgtools" failed.
Run nf-test with cram_call_vardictjava-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with cram_call_vardictjava-latest-everything
The operation was canceled.
Run nf-test with cram_call_vardictjava-23.04.0
The job was canceled because "_23_04_0_vcf_ped_rtgtools" failed.
Run nf-test with cram_call_vardictjava-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with cram_call_vardictjava-23.04.0
The operation was canceled.
Run nf-test with vcf_annotation-23.04.0
The job was canceled because "_23_04_0_vcf_ped_rtgtools" failed.
Run nf-test with vcf_annotation-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with vcf_annotation-23.04.0
The operation was canceled.
Run nf-test with pipeline_callers-23.04.0
The job was canceled because "_23_04_0_vcf_ped_rtgtools" failed.
Run nf-test with pipeline_callers-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with pipeline_callers-23.04.0
The operation was canceled.
Run nf-test with pipeline_variations2-23.04.0
The job was canceled because "_23_04_0_vcf_ped_rtgtools" failed.
Run nf-test with pipeline_variations2-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with pipeline_variations2-23.04.0
The operation was canceled.
Run nf-test with cram_prepare_samtools_bedtools-23.04.0
The job was canceled because "_23_04_0_vcf_ped_rtgtools" failed.
Run nf-test with cram_call_genotype_gatk4-23.04.0
The job was canceled because "_23_04_0_vcf_ped_rtgtools" failed.
Run nf-test with cram_prepare_samtools_bedtools-23.04.0
The operation was canceled.
Run nf-test with cram_call_genotype_gatk4-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with cram_prepare_samtools_bedtools-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with cram_call_genotype_gatk4-23.04.0
The operation was canceled.
Run nf-test with cram_call_genotype_gatk4-latest-everything
The job was canceled because "_23_04_0_vcf_ped_rtgtools" failed.
Run nf-test with cram_call_genotype_gatk4-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with cram_call_genotype_gatk4-latest-everything
The operation was canceled.
Run nf-test with pipeline_variations2-latest-everything
The job was canceled because "_23_04_0_vcf_ped_rtgtools" failed.
Run nf-test with pipeline_variations2-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with pipeline_variations-23.04.0
The job was canceled because "_23_04_0_vcf_ped_rtgtools" failed.
Run nf-test with pipeline_variations-23.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with pipeline_variations-23.04.0
The operation was canceled.
Run nf-test with pipeline_callers-latest-everything
The job was canceled because "_23_04_0_vcf_ped_rtgtools" failed.
Run nf-test with pipeline_callers-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with vcf_extract_relate_somalier-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run nf-test with vcf_extract_relate_somalier-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with vcf_validate_small_variants-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run nf-test with vcf_validate_small_variants-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with input_split_bedtools-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run nf-test with input_split_bedtools-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with vcf_ped_rtgtools-23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, mikepenz/action-junit-report@v3, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run nf-test with vcf_ped_rtgtools-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with vcf_upd_updio-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with pipeline_gvcfs-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with cram_prepare_samtools_bedtools-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with pipeline_default-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with input_split_bedtools-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with pipeline_variations-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with cram_call_vardictjava-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with cram_call_vardictjava-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with vcf_annotation-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with pipeline_callers-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with pipeline_variations2-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with cram_call_genotype_gatk4-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with cram_prepare_samtools_bedtools-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with cram_call_genotype_gatk4-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with pipeline_variations2-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with pipeline_variations-23.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with pipeline_callers-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23

Artifacts

Produced during runtime
Name Size
nf-test-workdir Expired
7.77 MB