fix some small issues

nf-cmgg · Sep 20, 2024 · 0e99623 · 0e99623
1 parent cc20971
commit 0e99623
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Showing 2 changed files with 2 additions and 6 deletions.
diff --git a/assets/samplesheet.csv b/assets/samplesheet.csv
@@ -1,4 +1,4 @@
 sample,family,cram,crai,roi,ped,truth_vcf,truth_tbi,truth_bed,vardict_min_af
 NA24143,Proband_12345,https://github.com/nf-cmgg/test-datasets/raw/germline/data/genomics/homo_sapiens/illumina/crams/NA24143.cram,,,https://github.com/nf-cmgg/test-datasets/raw/germline/data/genomics/homo_sapiens/genome/test.ped,https://github.com/nf-cmgg/test-datasets/raw/germline/data/genomics/homo_sapiens/illumina/vcfs/NA24143.vcf.gz,https://github.com/nf-cmgg/test-datasets/raw/germline/data/genomics/homo_sapiens/illumina/vcfs/NA24143.vcf.gz.tbi,https://github.com/nf-cmgg/test-datasets/raw/germline/data/genomics/homo_sapiens/illumina/regions/roi.bed,0.01
 NA24149,Proband_12345,https://github.com/nf-cmgg/test-datasets/raw/germline/data/genomics/homo_sapiens/illumina/crams/NA24149.cram,https://github.com/nf-cmgg/test-datasets/raw/germline/data/genomics/homo_sapiens/illumina/crams/NA24149.cram.crai,https://github.com/nf-cmgg/test-datasets/raw/germline/data/genomics/homo_sapiens/illumina/regions/roi.bed,,https://github.com/nf-cmgg/test-datasets/raw/germline/data/genomics/homo_sapiens/illumina/vcfs/NA24149.vcf.gz,,,
-NA24149,Proband_12345,https://github.com/nf-cmgg/test-datasets/raw/germline/data/genomics/homo_sapiens/illumina/crams/NA24385.cram,https://github.com/nf-cmgg/test-datasets/raw/germline/data/genomics/homo_sapiens/illumina/crams/NA24385.cram.crai,https://github.com/nf-cmgg/test-datasets/raw/germline/data/genomics/homo_sapiens/illumina/regions/roi.bed,,https://github.com/nf-cmgg/test-datasets/raw/germline/data/genomics/homo_sapiens/illumina/vcfs/NA24385.vcf.gz,,,
+NA24385,Proband_12345,https://github.com/nf-cmgg/test-datasets/raw/germline/data/genomics/homo_sapiens/illumina/crams/NA24385.cram,https://github.com/nf-cmgg/test-datasets/raw/germline/data/genomics/homo_sapiens/illumina/crams/NA24385.cram.crai,https://github.com/nf-cmgg/test-datasets/raw/germline/data/genomics/homo_sapiens/illumina/regions/roi.bed,,https://github.com/nf-cmgg/test-datasets/raw/germline/data/genomics/homo_sapiens/illumina/vcfs/NA24385.vcf.gz,,,
diff --git a/main.nf b/main.nf
@@ -177,7 +177,7 @@ workflow {
         }
     }
 
-    callers = params.callers.tokenize(",")
+    def callers = params.callers.tokenize(",")
     callers.each { caller ->
         if(!(caller in GlobalVariables.availableCallers)) { error("\"${caller}\" is not a supported callers please use one or more of these instead: ${GlobalVariables.availableCallers}")}
     }
@@ -194,10 +194,6 @@ workflow {
 
     def multiqc_logo = params.multiqc_logo   ?: "$projectDir/assets/CMGG_logo.png"
 
-<<<<<<< HEAD
-    print(params.genomes)
-=======
->>>>>>> 3726a041a4fa98d73748421c2a5e8a5b3cd6e7c1
     //
     // SUBWORKFLOW: Run initialisation tasks
     //