Add nf-core Agent Skills (pipeline, lint, module, containers)#3
Closed
edmundmiller wants to merge 2 commits into
Closed
Add nf-core Agent Skills (pipeline, lint, module, containers)#3edmundmiller wants to merge 2 commits into
edmundmiller wants to merge 2 commits into
Conversation
Port the portable Agent Skills payload from nf-core-skills: skills/ (pipeline, lint, module, containers), the AGENTS.md table of contents, and docs/ (ARCHITECTURE, CONTRIBUTING). Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Keep nf-core branding (logo, badges, repository rules) and add the skills table plus install instructions for Claude Code, Codex CLI, OpenCode, and Cursor. Point repo references at nf-core/agents. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
This was referenced Jun 16, 2026
Author
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Ports the core Agent Skills content from edmundmiller/nf-core-skills into
nf-core/agents, per the #agents Slack thread ("we should try to combine all these now").This is PR 1 of 2 — the portable, harness-agnostic content. A follow-up PR adds the validation harness (
prek.toml, hook scripts, tests, CI) and the multi-harness plugin manifests.What's included
skills/— four skills:nf-core-pipeline,nf-core-lint,nf-core-module,nf-core-containers.AGENTS.md— table of contents for agents working in this repo.docs/ARCHITECTURE.md,docs/CONTRIBUTING.md— layout and how to author a skill.README.md— keeps the nf-core branding (logo, badges, repository rules) and folds in the skills table + install instructions for Claude Code, Codex CLI, OpenCode, and Cursor.Notes for reviewers
nf-core/skills→nf-core/agents.AGENTS.mdanddocs/ARCHITECTURE.mdreference files (prek.toml,.claude-plugin/,plugins/, hook scripts) that land in the follow-up PR — those links resolve once both are merged.LICENSEis unchanged (nf-core copyright).🤖 Generated with Claude Code