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741 add nanopore support#830

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samuell wants to merge 16 commits intonf-core:devnf-core/ampliseq:devfrom samuell:741-add-nanopore-supportsamuell/ampliseq-fork:741-add-nanopore-supportCopy head branch name to clipboard

+665-491

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Commits on Apr 3, 2024

• Merge pull request nf-core#725 from nf-core/dev

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Commits on Jun 27, 2024

• Merge pull request nf-core#755 from nf-core/dev

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Commits on Aug 5, 2024

• Merge pull request nf-core#771 from nf-core/dev

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Commits on Nov 15, 2024

• Release 2.12.0

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Commits on Jan 28, 2025

• Add sbdi-gtdb R09-RS220

  

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• Adapt base config for local laptop

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• Add Emu to main AmpliSeq workflow

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• Add changes for Emu to nextflow.config

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• Add changes for Emu to modules.config

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• Add changes for Emu to nextflow_schema.json

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• Add changes for Emu to utils_nfcore_ampliseq_pipeline/main.nf

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Commits on Jan 29, 2025

• Add the Emu module createdy by Frans Wallin (@fwa93)

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• Turn off stuff not relevant when analyzing Nanopore data

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• Remove hard-coded paths

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• Add missing reads param in schema

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• Run nf-core pipelines schema build to format schema file

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