remove obsolete test profiles

nf-core · Feb 14, 2025 · ed3c6c2 · ed3c6c2
1 parent dbf28de
commit ed3c6c2
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Showing 4 changed files with 6 additions and 77 deletions.
diff --git a/conf/test_full.config b/conf/test_full.config
diff --git a/conf/test_learn.config b/conf/test_learn.config
diff --git a/conf/test_stub.config b/conf/test_stub.config
@@ -8,10 +8,11 @@ params {
     config_profile_description = 'stub run to check pipeline function'
 
     // Input data
-    csv         = "${projectDir}/bin/tests/test_data/dna_experiment/test.csv"
-    exp_conf    = "${projectDir}/examples/test.json"
-    model       = "${projectDir}/bin/tests/test_model/dnatofloat_model.py"
-    tune_conf   = "${projectDir}/bin/tests/test_model/dnatofloat_model_cpu.yaml"
+    data         = "https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/deepmodeloptim/testdata/titanic/titanic_stimulus.csv"
+    data_config  = "https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/deepmodeloptim/testdata/titanic/titanic.yaml"
+    model        = "https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/deepmodeloptim/testdata/titanic/titanic_model.py"
+    model_config = "https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/deepmodeloptim/testdata/titanic/titanic_model_cpu.yaml"
+
 }
 
 process {
@@ -21,8 +22,5 @@ process {
         memory: 6.GB,
         time: 6.h
     ]
-
-    withName: 'INTERPRET_JSON|STIMULUS_NOISE_CSV|STIMULUS_SHUFFLE_CSV|STIMULUS_SPLIT_CSV|TORCH_TRAIN' {
-        container = 'quay.io/biocontainers/gawk:5.1.0'
-    }
+    container = 'quay.io/biocontainers/gawk:5.1.0'
 }
diff --git a/nextflow.config b/nextflow.config
@@ -175,10 +175,8 @@ profiles {
         executor.memory         = 8.GB
     }
     test         { includeConfig "conf/test.config"       }
-    test_learn   { includeConfig "conf/test_learn.config" }
     test_stub    { includeConfig "conf/test_stub.config"  }
     local        { includeConfig "conf/local.config"      }
-    test_full    { includeConfig 'conf/test_full.config'  }
 }
 
 // Load nf-core custom profiles from different Institutions