Added author and license information to all bin scripts.

bin/apply_clahe.dask.py

@@ -1,4 +1,5 @@
 #!/usr/bin/env python
+## Written by Kresimir Bestak and Florian Wuennemann and released under the MIT license.
 from __future__ import print_function, division
 from distutils.log import error
 import time

bin/collect_QC.py

@@ -1,8 +1,8 @@
 #!/usr/bin/env python
-
+#### Written by Kresimir Bestak and Florian Wuennemann and released under the MIT license.
 #### This script takes regionprops_tabe output from mcquant and the raw spot tables from Resolve bioscience as input
 #### and calculates some QC metrics for masks and spot assignments
-### If png files are provided, it combines them into one
+#### If png files are provided, it combines them into one
 
 import argparse
 import pandas as pd

bin/create_anndata.py

@@ -1,4 +1,5 @@
 #!/usr/bin/env python
+## Written by Kresimir Bestak and Florian Wuennemann and released under the MIT license.
 import pandas as pd
 import numpy as np
 from anndata import AnnData

bin/crop_hdf5.py

@@ -1,4 +1,5 @@
 #!/usr/bin/env python3
+## Written by Kresimir Bestak and Florian Wuennemann and released under the MIT license
 import tifffile
 import numpy as np
 import h5py

bin/crop_tiff.py

@@ -1,4 +1,5 @@
 #!/usr/bin/env python3
+## Written by Kresimir Bestak and Florian Wuennemann and released under the MIT license
 import ast
 import tifffile as tiff
 import os

bin/maskfilter.py

@@ -1,4 +1,5 @@
 #!/usr/bin/env python
+## Written by Kresimir Bestak and Florian Wuennemann and released under the MIT license
 import time
 import argparse
 from argparse import ArgumentParser as AP

bin/spot2cell.py

@@ -1,4 +1,5 @@
 #!/usr/bin/env python
+## Written by Kresimir Bestak and Florian Wuennemann and released under the MIT license
 
 ## Import packages
 import pandas as pd

bin/stack.py

@@ -1,4 +1,5 @@
 #!/usr/bin/env python
+## Written by Kresimir Bestak and Florian Wuennemann and released under the MIT license
 import numpy as np
 import argparse
 import tifffile