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Release 1.1.0 - Resolution Road#105

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FloWuenne wants to merge 92 commits intomasternf-core/molkart:masterfrom devnf-core/molkart:devCopy head branch name to clipboard

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Commits on Jan 3, 2024

• Merged changes from nf-core template

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Commits on Jan 29, 2024

• Template update for nf-core/tools version 2.12

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Commits on Feb 20, 2024

• Template update for nf-core/tools version 2.13

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Commits on Feb 21, 2024

• Merge pull request #58 from nf-core/master

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Commits on Feb 29, 2024

• Template update for nf-core/tools version 2.13.1

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• Template update for nf-core/tools version 2.14.0

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Commits on May 9, 2024

• Template update for nf-core/tools version 2.14.1

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Commits on Jun 11, 2024

• template_update_2.14.1

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• template update

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• removed leftover view()

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• fixed modules.json

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Commits on Jun 12, 2024

• Update CHANGELOG.md

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• removed todo in ci.yml, added singularity test

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• removed singularity test

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• Merge pull request #71 from kbestak/merging-template-updates

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Commits on Sep 9, 2024

• Fixed multiqc report

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• updated changelog

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• Update CHANGELOG.md

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• removed seqera container for multiqc

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Commits on Sep 10, 2024

• mindagap_skip

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• fixed collect_QC

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• added test for skip mindagap

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• adapted citations

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Commits on Sep 15, 2024

• Merge pull request #76 from kbestak/multiqc_report_fix

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Commits on Sep 24, 2024

• Merge pull request #78 from kbestak/mindagap_skip

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Commits on Sep 26, 2024

• added_stardist

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Commits on Sep 27, 2024

• added test

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• added stardist to test config

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• stardist documentation

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• Merge pull request #2 from kbestak/demo

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Commits on Oct 8, 2024

• Template update for nf-core/tools version 3.0.0

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Commits on Oct 9, 2024

• Template update for nf-core/tools version 3.0.1

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Commits on Oct 11, 2024

• Template update for nf-core/tools version 3.0.2

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Commits on Oct 26, 2024

• resolved template update 3.0.2 conflicts

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Commits on Oct 28, 2024

• Merge pull request #88 from kbestak/merging-template-updates

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Commits on Nov 25, 2024

• Merge branch 'dev' into stardist

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• removed validation for linting

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Commits on Dec 12, 2024

• Template update for nf-core/tools version 3.1.0

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• resolved conflicts 3.1.0

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• added space

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• include configs

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• updated info

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Commits on Dec 20, 2024

• Template update for nf-core/tools version 3.1.1

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Commits on Jan 20, 2025

• Template update for nf-core/tools version 3.1.2

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Commits on Jan 27, 2025

• Template update for nf-core/tools version 3.2.0

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Commits on Jan 29, 2025

• Update nextflow.config

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• Update conf/modules.config

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• merging_320

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• added stardist to full test

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Commits on Feb 7, 2025

• Merge pull request #94 from kbestak/merging_310

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Commits on Feb 12, 2025

• bump: Updated all modules.

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Commits on Feb 13, 2025

• Merge pull request #98 from FloWuenne/modules_version_bump

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• croptiff change

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• spot2cell change

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• Merge remote-tracking branch 'origin/dev' into stardist

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• stain sorting cleanup

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• code cleanup

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• Merge pull request #81 from kbestak/stardist

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• Merge pull request #99 from kbestak/code_cleanup

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Commits on Feb 20, 2025

• Added author and license information to all bin scripts.

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• Merge pull request #100 from FloWuenne/bin_author_license

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• Updated manifest with correct name and doi.

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Commits on Feb 21, 2025

• Update nextflow.config

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• Merge pull request #101 from FloWuenne/manifest_updates

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Commits on Feb 25, 2025

• readme update

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• metromap update

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• documentation

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• updated schema

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• updated changelog

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Commits on Feb 26, 2025

• Update docs/usage.md

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• Merge pull request #102 from kbestak/documentation

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• Update CHANGELOG.md

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• apply correction and organize

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• reformatted changelog

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Commits on Feb 27, 2025

• added tool versions

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• Merge pull request #103 from kbestak/changelog

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Commits on Feb 28, 2025

• lint fix: Moved local modules to individual folders and rename to main.nf

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• Updated CHANGELOG.

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• lint fix: Removed leftover TODOs from template update.

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• Bump version to 1.1.0

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• Fix pre-commit formatting.

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• Added /main to all local module includes.

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• Merge pull request #104 from FloWuenne/prepare-release-1.1.0

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Commits on Mar 3, 2025

• updated ci to exlude conda

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• removed commented conda reference

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• skipping singularity on dev

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• returned singularity testing to dev

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• Merge pull request #106 from kbestak/ci_update

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Commits on Mar 4, 2025

• Update CITATIONS.md

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Commits on Mar 5, 2025

• Updated logos

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• Removed conf/igenomes_ignored.config file.

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• fix: Added modified and removed files to .nf-core.yml

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