unable to use function processed_meta

[allaway]

When running this code:

samplesheet <- "syn64398075" # samplesheet can be stored on Synapse or locally
syn_out <- "syn64387020"
fileview <- "syn51203588"

i <- map_sample_input_ss(samplesheet) #1
o <- map_sample_output_sarek(syn_out, fileview) #2

o$Strelka2 <- o$Strelka2 %>% 
  dplyr::mutate(sample = stringr::str_remove(sample, "_vs_.+"))

sarek_meta <- processed_meta(i, o, workflow_link = "https://github.com/nf-core/sarek/tree/3.2.2")

I get the error:

> sarek_meta <- processed_meta(i, o, workflow_link = "https://github.com/nf-core/sarek/tree/3.2.2")
Deriving annotations for 84 files from DeepVariant with bts:ProcessedVariantCallsTemplate
Error in rbindlist(lapply(setNames(Map(function(f, t) copy_annotations(f,  : 
  Item 1 of input is not a data.frame, data.table or list

I tested this with reticulate 1.28, 1.39, 1.40 and got the same error each time. I also tested this with synapseclient 4.3.1, 4.4.0, 4.6.0. I am using the current develop version of nfportalutils.

One interesting thing I noted is that synGetAnnotations from synapser seems to return an R list instead of a python Dict/Annotations object.