Make all jep types compatible with isolated interpreters.

* Make all jep types compatible with isolated interpreters.

* Revert pyjclass name and clean up formatting.

src/main/c/Include/pyembed.h

@@ -1,7 +1,7 @@
 /*
    jep - Java Embedded Python
 
-   Copyright (c) 2004-2022 JEP AUTHORS.
+   Copyright (c) 2004-2025 JEP AUTHORS.
 
    This file is licensed under the the zlib/libpng License.
 
@@ -42,6 +42,12 @@ struct __JepThread {
 };
 typedef struct __JepThread JepThread;
 
+struct __JepModuleState {
+    PyTypeObject *PyJObject_Type;
+    PyTypeObject *PyJClass_Type;
+    PyTypeObject *PyJArray_Type;
+};
+typedef struct __JepModuleState JepModuleState;
 
 void pyembed_startup(JNIEnv*, jobjectArray, jint, jint, jstring, jint, jstring,
                      jint, jint, jint, jint, jint);
@@ -68,6 +74,7 @@ jobject pyembed_getvalue(JNIEnv*, intptr_t, char*, jclass);
 JNIEnv* pyembed_get_env(void);
 JepThread* pyembed_get_jepthread(void);
 PyObject* pyembed_get_jep_module(void);
+JepModuleState* pyembed_get_module_state(void);
 
 // -------------------------------------------------- set() methods
 

src/main/c/Include/pyjarray.h

@@ -1,7 +1,7 @@
 /*
    jep - Java Embedded Python
 
-   Copyright (c) 2004-2022 JEP AUTHORS.
+   Copyright (c) 2004-2025 JEP AUTHORS.
 
    This file is licensed under the the zlib/libpng License.
 
@@ -32,7 +32,7 @@
 #define _Included_pyjarray
 
 
-extern PyTypeObject PyJArray_Type;
+extern PyType_Spec PyJArray_Spec;
 
 // c storage for our stuff, managed by python interpreter.
 typedef struct {

src/main/c/Include/pyjclass.h

@@ -1,7 +1,7 @@
 /*
    jep - Java Embedded Python
 
-   Copyright (c) 2004-2022 JEP AUTHORS.
+   Copyright (c) 2004-2025 JEP AUTHORS.
 
    This file is licensed under the the zlib/libpng License.
 
@@ -36,7 +36,7 @@
 #ifndef _Included_pyjclass
 #define _Included_pyjclass
 
-extern PyTypeObject PyJClass_Type;
+extern PyType_Spec PyJClass_Spec;
 
 typedef struct {
     PyObject_HEAD
@@ -52,8 +52,6 @@ typedef struct {
 
 PyObject* PyJClass_Wrap(JNIEnv*, jobject);
 
-#define PyJClass_Check(pyobj) \
-    PyObject_TypeCheck(pyobj, &PyJClass_Type)
-
+int PyJClass_Check(PyObject*);
 
 #endif // ndef pyjclass

src/main/c/Include/pyjobject.h

@@ -1,7 +1,7 @@
 /*
    jep - Java Embedded Python
 
-   Copyright (c) 2004-2022 JEP AUTHORS.
+   Copyright (c) 2004-2025 JEP AUTHORS.
 
    This file is licensed under the the zlib/libpng License.
 
@@ -31,7 +31,7 @@
 #define _Included_pyjobject
 
 
-extern PyTypeObject PyJObject_Type;
+extern PyType_Spec PyJObject_Spec;
 
 /*
  * The common fields for PyJObject. The usage of this macro is similar to
@@ -59,8 +59,7 @@ typedef struct {
  */
 PyObject* PyJObject_New(JNIEnv*, PyTypeObject*, jobject, jclass);
 
-#define PyJObject_Check(pyobj) \
-    PyObject_TypeCheck(pyobj, &PyJObject_Type)
+int PyJObject_Check(PyObject*);
 
 
 #endif // ndef pyjobject

src/main/c/Jep/pyembed.c

@@ -1,7 +1,7 @@
 /*
    jep - Java Embedded Python
 
-   Copyright (c) 2004-2022 JEP AUTHORS.
+   Copyright (c) 2004-2025 JEP AUTHORS.
 
    This file is licensed under the the zlib/libpng License.
 
@@ -157,18 +157,55 @@ static struct PyMethodDef jep_methods[] = {
 
     { NULL, NULL }
 };
+
+static void free_jep_module(PyObject* modjep)
+{
+    JepModuleState* modState = (JepModuleState*) PyModule_GetState(modjep);
+    if (modState) {
+        Py_CLEAR(modState->PyJObject_Type);
+        Py_CLEAR(modState->PyJClass_Type);
+        Py_CLEAR(modState->PyJArray_Type);
+    }
+}
+
 static struct PyModuleDef jep_module_def = {
     PyModuleDef_HEAD_INIT,
-    "_jep",              /* m_name */
-    "_jep",              /* m_doc */
-    0,                   /* m_size */
-    jep_methods,         /* m_methods */
-    NULL,                /* m_reload */
-    NULL,                /* m_traverse */
-    NULL,                /* m_clear */
-    NULL,                /* m_free */
+    "_jep",                     /* m_name */
+    "_jep",                     /* m_doc */
+    sizeof(JepModuleState),     /* m_size */
+    jep_methods,                /* m_methods */
+    NULL,                       /* m_reload */
+    NULL,                       /* m_traverse */
+    NULL,                       /* m_clear */
+    (freefunc) free_jep_module, /* m_free */
 };
 
+static int pyjtypes_ready(PyObject *modjep)
+{
+    JepModuleState* modState = (JepModuleState*) PyModule_GetState(modjep);
+    if (!modState) {
+        return -1;
+    }
+    modState->PyJObject_Type = (PyTypeObject*) PyType_FromSpec(&PyJObject_Spec);
+    if (!modState->PyJObject_Type) {
+        return -1;
+    }
+    modState->PyJClass_Type = (PyTypeObject*) PyType_FromSpecWithBases(
+                                  &PyJClass_Spec, (PyObject*) modState->PyJObject_Type);
+    if (!modState->PyJClass_Type) {
+        Py_CLEAR(modState->PyJObject_Type);
+        return -1;
+    }
+    modState->PyJArray_Type = (PyTypeObject*) PyType_FromSpecWithBases(
+                                  &PyJArray_Spec, (PyObject*) modState->PyJObject_Type);
+    if (!modState->PyJArray_Type) {
+        Py_CLEAR(modState->PyJObject_Type);
+        Py_CLEAR(modState->PyJClass_Type);
+        return -1;
+    }
+    return 0;
+}
+
 /*
  * Initialize the _jep module.
  *
@@ -220,6 +257,12 @@ static int initjep(JNIEnv *env, jboolean hasSharedModules)
             Py_INCREF(mainThreadModulesLock);
             PyModule_AddObject(modjep, "mainInterpreterModulesLock", mainThreadModulesLock);
         }
+        if (pyjtypes_ready(modjep)) {
+            Py_DECREF(modjep);
+            handle_startup_exception(env, "Failed to initialize PyJTypes");
+            return -1;
+        }
+
         /* still held by sys.modules. */
         Py_DECREF(modjep);
 #if JEP_NUMPY_ENABLED
@@ -231,29 +274,6 @@ static int initjep(JNIEnv *env, jboolean hasSharedModules)
     return 0;
 }
 
-/*
- * MSVC requires tp_base to be set at runtime instead of in the type
- * declaration. :/  Otherwise we could just set tp_base in the type declaration
- * and be done with it.  Since we are building an inheritance tree of types, we
- * need to ensure that all the tp_base are set for the subtypes before we
- * possibly use those subtypes.
- *
- * See https://docs.python.org/3/extending/newtypes.html
- */
-static int pyjtypes_ready(void)
-{
-    if (PyType_Ready(&PyJObject_Type) < 0) {
-        return -1;
-    }
-    if (!PyJClass_Type.tp_base) {
-        PyJClass_Type.tp_base = &PyJObject_Type;
-    }
-    if (PyType_Ready(&PyJClass_Type) < 0) {
-        return -1;
-    }
-    return 0;
-}
-
 static void handle_startup_exception(JNIEnv *env, const char* excMsg)
 {
     jclass excClass = (*env)->FindClass(env, "java/lang/IllegalStateException");
@@ -414,11 +434,6 @@ void pyembed_startup(JNIEnv *env,
         return;
     }
 
-    if (pyjtypes_ready()) {
-        handle_startup_exception(env, "Failed to initialize PyJTypes");
-        return;
-    }
-
     /*
      * Save a global reference to the sys.modules form the main thread to
      * support shared modules
@@ -770,6 +785,16 @@ PyObject* pyembed_get_jep_module(void)
     return modjep;
 }
 
+JepModuleState* pyembed_get_module_state(void)
+{
+    PyObject* modjep = pyembed_get_jep_module();
+    if (modjep) {
+        return (JepModuleState*) PyModule_GetState(modjep);
+    } else {
+        return NULL;
+    }
+}
+
 static PyObject* pyembed_jproxy(PyObject *self, PyObject *args)
 {
     JepThread     *jepThread;
@@ -1444,7 +1469,6 @@ static int maybe_pyc_file(FILE *fp, const char* filename, const char* ext,
         pymodule = (PyObject *) module;
 
 
-
 void pyembed_setparameter_object(JNIEnv *env,
                                  intptr_t _jepThread,
                                  intptr_t module,