Skip to content

enh: alternative bold target spaces - #3668

Draft
mgxd wants to merge 27 commits into
masterfrom
enh/bold-coreg-level
Draft

enh: alternative bold target spaces#3668
mgxd wants to merge 27 commits into
masterfrom
enh/bold-coreg-level

Conversation

@mgxd

@mgxd mgxd commented Aug 19, 2026

Copy link
Copy Markdown
Collaborator

adds --bold-coreg-level to allow alternative bold target spaces in addition to run level processing.

@mgxd
mgxd force-pushed the enh/bold-coreg-level branch from 30c4ecf to bec0d71 Compare August 19, 2026 17:40
@mgxd
mgxd force-pushed the enh/bold-coreg-level branch from bec0d71 to ce3f9a1 Compare August 19, 2026 19:17

@effigies effigies left a comment

Copy link
Copy Markdown
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Partial review

Comment thread fmriprep/data/io_spec.json Outdated
Comment thread fmriprep/data/io_spec.json Outdated
Comment thread fmriprep/data/io_spec.json Outdated
Comment thread fmriprep/utils/tests/test_bids.py
Comment thread fmriprep/utils/bids.py Outdated
Comment thread fmriprep/workflows/bold/apply.py Outdated
Comment thread fmriprep/workflows/bold/base.py Outdated
mgxd and others added 4 commits August 19, 2026 15:22
Co-authored-by: Christopher J. Markiewicz <effigies@gmail.com>
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "bash -c '! pixi lock --check || git checkout .'",
 "exit": 0,
 "extra_inputs": [],
 "inputs": [
  "pixi.lock",
  "pyproject.toml"
 ],
 "outputs": [
  "pixi.lock"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
@codecov

codecov Bot commented Aug 20, 2026

Copy link
Copy Markdown

Codecov Report

❌ Patch coverage is 85.28610% with 54 lines in your changes missing coverage. Please review.
✅ Project coverage is 74.83%. Comparing base (e42ef4e) to head (aaf5240).
⚠️ Report is 11 commits behind head on master.

Files with missing lines Patch % Lines
fmriprep/workflows/bold/coreg.py 74.54% 20 Missing and 8 partials ⚠️
fmriprep/workflows/base.py 81.05% 11 Missing and 7 partials ⚠️
fmriprep/workflows/bold/template.py 85.71% 1 Missing and 2 partials ⚠️
fmriprep/cli/parser.py 33.33% 1 Missing and 1 partial ⚠️
fmriprep/utils/bids.py 93.33% 1 Missing and 1 partial ⚠️
fmriprep/workflows/bold/outputs.py 75.00% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##           master    #3668      +/-   ##
==========================================
+ Coverage   74.22%   74.83%   +0.60%     
==========================================
  Files          62       65       +3     
  Lines        4989     5241     +252     
  Branches      535      568      +33     
==========================================
+ Hits         3703     3922     +219     
- Misses       1154     1176      +22     
- Partials      132      143      +11     

☔ View full report in Codecov by Harness.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

3 participants