ENH: BIDS filters and support *plugins* (incl. a rating widget as the example) #62
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Resolves: #57.
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Mar 23, 2023
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| head-motion: Head motion artifacts | ||
| eye-spillover: Eye spillover through <abbr title="phase-encoding">PE</abbr> axis | ||
| noneye-spillover: Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis | ||
| coil-failure: Coil failure | ||
| noise-global: Global noise | ||
| noise-local: Local noise | ||
| em-perturbation: <abbr title="electromagnetic">EM</abbr> interference/perturbation | ||
| wrap-around: Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around | ||
| ghost-aliasing: Aliasing ghosts | ||
| ghost-other: Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling) | ||
| inu: Intensity non-uniformity (B<sub>1</sub> bias) | ||
| field-variation: Temporal B<sub>1</sub> field non-uniformity variation | ||
| processing: Processing such as denoising, defacing or resamplings happened | ||
| uncategorized: Other uncategorized artifact(s) |
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@celprov this should facilitate the customization of options for the modality at hand (nipreps/mriqc#1009)
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@celprov @effigies if you can't give quick feedback just now, please let me know so I can merge. I would prefer to advance on nipreps/mriqc#1085 and use that as test bed. |
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I don't have time to review this promptly. |
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This PR
Plugins
Summary
In principle, with this PR we should be ready to generate MRIQC reports.
task-faketaskwithrunsand includes the rating widget): https://output.circle-artifacts.com/output/job/fb9ca829-ce38-46e4-b75b-8e00949a1802/artifacts/0/tmp/tests/output/nireports/sub-03_task-faketaskwithruns_bold.htmlFinalizes: nipreps/mriqc#57.