generate the layout of the zotero biblio

update benchmark methodology  #17

zotero.sh

@@ -0,0 +1,144 @@
+#!/bin/bash
+
+GROUP_ID="5582837"
+API_KEY=${ZOTERO_API_KEY}
+
+declare -A existing_collections
+declare -A collection_keys
+
+fetch_existing_collections() {
+  local start=0
+  local limit=100
+  local total=1
+
+  # Get total number of collections
+  total=$(curl -s -I -X GET "https://api.zotero.org/groups/$GROUP_ID/collections" \
+    -H "Zotero-API-Version: 3" \
+    -H "Authorization: Bearer $API_KEY" | grep -i 'Total-Results' | awk '{print $2}' | tr -d '\r')
+
+  while [[ $start -lt $total ]]; do
+    response=$(curl -s -X GET "https://api.zotero.org/groups/$GROUP_ID/collections?limit=$limit&start=$start" \
+      -H "Zotero-API-Version: 3" \
+      -H "Authorization: Bearer $API_KEY")
+
+    # Parse the response and store collections in an associative array
+    while read -r collection; do
+      key=$(echo "$collection" | jq -r '.key')
+      name=$(echo "$collection" | jq -r '.data.name')
+      parent=$(echo "$collection" | jq -r '.data.parentCollection')
+      existing_collections["$name|$parent"]="$key"
+      echo "Found collection '$name' in '$parent' with key $key."
+    done < <(echo "$response" | jq -c '.[]')
+
+    start=$((start + limit))
+  done
+}
+
+fetch_existing_collections existing_collections
+echo "Existing collections: ${!existing_collections[@]}"
+
+# Create top-level collections
+collections=("Our Publications" "External Publications")
+top_level_keys=()
+
+for collection in "${collections[@]}"; do
+  # Check if collection exists
+  parent="false"
+  collection_key="${existing_collections["$collection|$parent"]}"
+  echo "Collection key: $collection_key"
+
+  if [[ -n "$collection_key" ]]; then
+    echo "Collection '$collection' already exists with key $collection_key."
+  else
+    # Create collection
+    response=$(curl -s -X POST "https://api.zotero.org/groups/$GROUP_ID/collections" \
+      -H "Zotero-API-Version: 3" \
+      -H "Content-Type: application/json" \
+      -H "Authorization: Bearer $API_KEY" \
+      -d "[{\"name\": \"$collection\"}]")
+
+    echo "Response for creating '$collection': $response"
+
+    # Extract the key
+    collection_key=$(echo "$response" | jq -r '.success."0"')
+
+    if [[ -z "$collection_key" || "$collection_key" == "null" ]]; then
+      echo "Failed to create collection '$collection'. Exiting."
+      exit 1
+    fi
+
+    # Update the existing collections array
+    existing_collections["$collection|$parent"]="$collection_key"
+    echo "Created collection '$collection' with key $collection_key."
+  fi
+
+  # Store the key for use in sub-collections
+  collection_keys["$collection"]="$collection_key"
+done
+echo "Top-level collection keys: ${collection_keys[@]}"
+
+# Create WP sub-collections under each top-level collection
+wps=("WP1" "WP2" "WP3" "WP4" "WP5" "WP6" "WP7")
+sub_collections=("Articles" "Software" "Technical Notes" "Deliverables")
+
+for top_collection in "${collections[@]}"; do
+  parent_key="${collection_keys["$top_collection"]}"
+
+  for wp in "${wps[@]}"; do
+    # Check if WP collection exists
+    wp_key="${existing_collections["$wp|$parent_key"]}"
+
+    if [[ -n "$wp_key" ]]; then
+      echo "WP '$wp' under '$top_collection' already exists with key $wp_key."
+    else
+      # Create WP collection
+      response=$(curl -s -X POST "https://api.zotero.org/groups/$GROUP_ID/collections" \
+        -H "Zotero-API-Version: 3" \
+        -H "Content-Type: application/json" \
+        -H "Authorization: Bearer $API_KEY" \
+        -d "[{\"name\": \"$wp\", \"parentCollection\": \"$parent_key\"}]")
+
+      echo "Response for creating WP '$wp' under '$top_collection': $response"
+
+      wp_key=$(echo "$response" | jq -r '.success."0"')
+
+      if [[ -z "$wp_key" || "$wp_key" == "null" ]]; then
+        echo "Failed to create WP '$wp' under '$top_collection'. Exiting."
+        exit 1
+      fi
+
+      # Update existing collections
+      existing_collections["$wp|$parent_key"]="$wp_key"
+      echo "Created WP '$wp' under '$top_collection' with key $wp_key."
+    fi
+
+    # Create sub-collections under WP
+    for sub_collection in "${sub_collections[@]}"; do
+      sub_key="${existing_collections["$sub_collection|$wp_key"]}"
+
+      if [[ -n "$sub_key" ]]; then
+        echo "Sub-collection '$sub_collection' under '$wp' already exists with key $sub_key."
+      else
+        # Create sub-collection
+        response=$(curl -s -X POST "https://api.zotero.org/groups/$GROUP_ID/collections" \
+          -H "Zotero-API-Version: 3" \
+          -H "Content-Type: application/json" \
+          -H "Authorization: Bearer $API_KEY" \
+          -d "[{\"name\": \"$sub_collection\", \"parentCollection\": \"$wp_key\"}]")
+
+        echo "Response for creating '$sub_collection' under '$wp': $response"
+
+        sub_key=$(echo "$response" | jq -r '.success."0"')
+
+        if [[ -z "$sub_key" || "$sub_key" == "null" ]]; then
+          echo "Failed to create sub-collection '$sub_collection' under '$wp'. Exiting."
+          exit 1
+        fi
+
+        # Update existing collections
+        existing_collections["$sub_collection|$wp_key"]="$sub_key"
+        echo "Created sub-collection '$sub_collection' under '$wp' with key $sub_key."
+      fi
+    done
+  done
+done