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NTR humeral circumflex arteries (#3343)
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* NTR humeral circumflex arteries

NTR humeral circumflex arteries

* Fix #3344 broken link to SSOM documentation

Fix #3344 broken link to SSOM documentation

* Revert "Fix #3344 broken link to SSOM documentation"

This reverts commit db7c18a.

* Add logical axiom to supply 'upper arm skin'
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aleixpuigb authored Aug 22, 2024
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4 changes: 3 additions & 1 deletion src/patterns/data/default/artery_and_arteriole_pattern.tsv
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Expand Up @@ -18,4 +18,6 @@ UBERON:8600098 dorsal lingual artery FMA:49546 UBERON:0001637 UBERON:0001456 "An
UBERON:8600099 accessory meningeal artery FMA:79467 UBERON:0001637 UBERON:0000033 "An artery that branches from the maxillary artery and supplies the meninges. The accessory meningeal artery ascends through the foramen ovale to enter the cranial cavity and supply the dura mater of the floor of the middle cranial fossa and of the trigeminal cave, and to the trigeminal ganglion." wikipedia:Accessory_meningeal_artery UBERON:0001616 UBERON:0010743 https://orcid.org/0000-0001-6677-8489 2024-06-06T09:53:48Z
UBERON:8600100 artery of pterygoid canal FMA:85528 UBERON:0001637 UBERON:0001456 "An artery that branches from the maxillary artery and supplies blood to structures in the auditory tube, tympanic cavity, and upper pharynx. The artery of the pterygoid canal courses through the pterygoid canal, a small bony canal located in the sphenoid bone of the skull." wikipedia:Artery_of_the_pterygoid_canal UBERON:0001616 UBERON:0006562|UBERON:0001756|UBERON:0002393 https://orcid.org/0000-0001-6677-8489 2024-06-06T09:53:48Z
UBERON:8600101 descending palatine artery FMA:49791 UBERON:0001637 UBERON:0001456 An artery that branches from the maxillary artery and supplies the hard and soft palate. wikipedia:Descending_palatine_artery UBERON:0001616 UBERON:0003216|UBERON:0001733 https://orcid.org/0000-0001-6677-8489 2024-06-06T09:53:48Z
UBERON:8600102 left anterior descending artery FMA:3862 UBERON:0001637 UBERON:0000915 "An artery that branches from the left coronary artery and supplies the anterior wall of the left ventricle, the interventricular septum, and the apex of the heart." wikipedia:Left_anterior_descending_artery anterior interventricular branch of left coronary artery FMA:3862 UBERON:0001626 https://orcid.org/0000-0001-6677-8489 2024-06-06T09:53:48Z
UBERON:8600102 left anterior descending artery FMA:3862 UBERON:0001637 UBERON:0000915 "An artery that branches from the left coronary artery and supplies the anterior wall of the left ventricle, the interventricular septum, and the apex of the heart." wikipedia:Left_anterior_descending_artery anterior interventricular branch of left coronary artery FMA:3862 UBERON:0001626 https://orcid.org/0000-0001-6677-8489 2024-06-06T09:53:48Z
UBERON:8600106 anterior humeral circumflex artery FMA:22680 UBERON:0001637 UBERON:0001467 "An artery that branches from the axilliary artery and supplies the deltoid, biceps brachii, and coracobrachialis muscles, the glenohumeral joint, the proximal humeral head, and the skin overlying the anterior aspect of the proximal humerus. This artery courses laterally across the anterior surface of the humerus and anastomoses with the posterior humeral circumflex artery." https://www.elsevier.com/resources/anatomy/cardiovascular-system/arteries/anterior-circumflex-humeral-artery/20091 UBERON:0001394 UBERON:0001476|UBERON:0001507|UBERON:0001505|UBERON:0001470|UBERON:0006801|UBERON:0004263 https://orcid.org/0000-0001-6677-8489 2024-08-20T09:53:48Z
UBERON:8600107 posterior humeral circumflex artery FMA:22684 UBERON:0001637 UBERON:0001467 "An artery that branches from the axilliary artery and supplies the deltoid, teres major, teres minor, and long and lateral heads of the triceps brachii muscles, glenohumeral joint, and the cutaneous supply to the area posterolateral to the proximal humerus. This artery courses posteriorly with the axillary nerve, through the quadrangular space, to the posterior aspect of the humerus and anastomoses with the anterior humeral circumflex artery." https://www.elsevier.com/resources/anatomy/cardiovascular-system/arteries/posterior-circumflex-humeral-artery/24676 UBERON:0001394 UBERON:0001476|UBERON:0001478|UBERON:0010496|UBERON:0001509|UBERON:0001470|UBERON:0004263 https://orcid.org/0000-0001-6677-8489 2024-08-20T09:53:48Z
39 changes: 37 additions & 2 deletions src/patterns/definitions.owl
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Expand Up @@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/uberon/patterns/definitions.owl>
<http://purl.obolibrary.org/obo/uberon/releases/2024-08-06/patterns/definitions.owl>
Annotation(owl:versionInfo "2024-08-06")
<http://purl.obolibrary.org/obo/uberon/releases/2024-08-21/patterns/definitions.owl>
Annotation(owl:versionInfo "2024-08-21")

Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0000004>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0000007>))
Expand Down Expand Up @@ -39,6 +39,12 @@ Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0001413>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0001456>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0001460>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0001467>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0001470>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0001476>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0001478>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0001505>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0001507>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0001509>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0001532>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0001533>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0001546>))
Expand Down Expand Up @@ -91,16 +97,19 @@ Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0003690>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0003697>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0003711>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0003712>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0004263>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0004647>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0005462>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0006562>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0006634>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0006801>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0007157>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0008200>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0008874>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0009042>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0009679>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0010369>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0010496>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0010743>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0011640>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0012199>))
Expand Down Expand Up @@ -245,6 +254,8 @@ Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_8600102>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_8600103>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_8600104>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_8600105>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_8600106>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_8600107>))
Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/BFO_0000050>))
Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/BSPO_0000120>))
Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/BSPO_0000121>))
Expand Down Expand Up @@ -1547,5 +1558,29 @@ SubClassOf(<http://purl.obolibrary.org/obo/UBERON_8600105> ObjectIntersectionOf(
SubClassOf(<http://purl.obolibrary.org/obo/UBERON_8600105> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0002355>))
SubClassOf(<http://purl.obolibrary.org/obo/UBERON_8600105> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002376> <http://purl.obolibrary.org/obo/UBERON_0001072>))

# Class: <http://purl.obolibrary.org/obo/UBERON_8600106> (anterior humeral circumflex artery)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://www.elsevier.com/resources/anatomy/cardiovascular-system/arteries/anterior-circumflex-humeral-artery/20091") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/UBERON_8600106> "An artery that branches from the axilliary artery and supplies the deltoid, biceps brachii, and coracobrachialis muscles, the glenohumeral joint, the proximal humeral head, and the skin overlying the anterior aspect of the proximal humerus. This artery courses laterally across the anterior surface of the humerus and anastomoses with the posterior humeral circumflex artery.")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/UBERON_8600106> <https://orcid.org/0000-0001-6677-8489>)
AnnotationAssertion(<http://purl.org/dc/terms/date> <http://purl.obolibrary.org/obo/UBERON_8600106> "2024-08-20T09:53:48Z")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/UBERON_8600106> "FMA:22680")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/UBERON_8600106> "anterior humeral circumflex artery")
SubClassOf(<http://purl.obolibrary.org/obo/UBERON_8600106> <http://purl.obolibrary.org/obo/UBERON_0001637>)
SubClassOf(<http://purl.obolibrary.org/obo/UBERON_8600106> ObjectIntersectionOf(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0020101> <http://purl.obolibrary.org/obo/UBERON_0001470>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0020101> <http://purl.obolibrary.org/obo/UBERON_0001476>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0020101> <http://purl.obolibrary.org/obo/UBERON_0001505>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0020101> <http://purl.obolibrary.org/obo/UBERON_0001507>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0020101> <http://purl.obolibrary.org/obo/UBERON_0004263>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0020101> <http://purl.obolibrary.org/obo/UBERON_0006801>)))
SubClassOf(<http://purl.obolibrary.org/obo/UBERON_8600106> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0001467>))
SubClassOf(<http://purl.obolibrary.org/obo/UBERON_8600106> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002252> <http://purl.obolibrary.org/obo/UBERON_0001394>))

# Class: <http://purl.obolibrary.org/obo/UBERON_8600107> (posterior humeral circumflex artery)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://www.elsevier.com/resources/anatomy/cardiovascular-system/arteries/posterior-circumflex-humeral-artery/24676") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/UBERON_8600107> "An artery that branches from the axilliary artery and supplies the deltoid, teres major, teres minor, and long and lateral heads of the triceps brachii muscles, glenohumeral joint, and the cutaneous supply to the area posterolateral to the proximal humerus. This artery courses posteriorly with the axillary nerve, through the quadrangular space, to the posterior aspect of the humerus and anastomoses with the anterior humeral circumflex artery.")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/UBERON_8600107> <https://orcid.org/0000-0001-6677-8489>)
AnnotationAssertion(<http://purl.org/dc/terms/date> <http://purl.obolibrary.org/obo/UBERON_8600107> "2024-08-20T09:53:48Z")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/UBERON_8600107> "FMA:22684")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/UBERON_8600107> "posterior humeral circumflex artery")
SubClassOf(<http://purl.obolibrary.org/obo/UBERON_8600107> <http://purl.obolibrary.org/obo/UBERON_0001637>)
SubClassOf(<http://purl.obolibrary.org/obo/UBERON_8600107> ObjectIntersectionOf(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0020101> <http://purl.obolibrary.org/obo/UBERON_0001470>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0020101> <http://purl.obolibrary.org/obo/UBERON_0001476>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0020101> <http://purl.obolibrary.org/obo/UBERON_0001478>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0020101> <http://purl.obolibrary.org/obo/UBERON_0001509>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0020101> <http://purl.obolibrary.org/obo/UBERON_0004263>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0020101> <http://purl.obolibrary.org/obo/UBERON_0010496>)))
SubClassOf(<http://purl.obolibrary.org/obo/UBERON_8600107> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0001467>))
SubClassOf(<http://purl.obolibrary.org/obo/UBERON_8600107> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002252> <http://purl.obolibrary.org/obo/UBERON_0001394>))


)
4 changes: 2 additions & 2 deletions src/patterns/pattern.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -77,7 +77,7 @@ EquivalentClasses(<http://purl.obolibrary.org/obo/uberon/patterns/anatomyPartOfA
# Class: <http://purl.obolibrary.org/obo/uberon/patterns/artery_and_arteriole_pattern.yaml> (xsd:string)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "xsd:string"^^xsd:string) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/uberon/patterns/artery_and_arteriole_pattern.yaml> "xsd:string"^^xsd:string)
AnnotationAssertion(<http://purl.org/dc/terms/date> <http://purl.obolibrary.org/obo/uberon/patterns/artery_and_arteriole_pattern.yaml> "xsd:dateTime"^^xsd:string)
AnnotationAssertion(<http://purl.org/dc/terms/date> <http://purl.obolibrary.org/obo/uberon/patterns/artery_and_arteriole_pattern.yaml> "xsd:string"^^xsd:string)
AnnotationAssertion(<http://purl.org/dc/terms/title> <http://purl.obolibrary.org/obo/uberon/patterns/artery_and_arteriole_pattern.yaml> "artery_and_arteriole_pattern"^^xsd:string)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/uberon/patterns/artery_and_arteriole_pattern.yaml> "xsd:string"^^xsd:string)
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "xsd:string"^^xsd:string) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/uberon/patterns/artery_and_arteriole_pattern.yaml> "xsd:string"^^xsd:string)
Expand Down Expand Up @@ -137,7 +137,7 @@ EquivalentClasses(<http://purl.obolibrary.org/obo/uberon/patterns/upper_teeth.ya
# Class: <http://purl.obolibrary.org/obo/uberon/patterns/vein_and_venule_pattern.yaml> (xsd:string)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "xsd:string"^^xsd:string) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/uberon/patterns/vein_and_venule_pattern.yaml> "xsd:string"^^xsd:string)
AnnotationAssertion(<http://purl.org/dc/terms/date> <http://purl.obolibrary.org/obo/uberon/patterns/vein_and_venule_pattern.yaml> "xsd:dateTime"^^xsd:string)
AnnotationAssertion(<http://purl.org/dc/terms/date> <http://purl.obolibrary.org/obo/uberon/patterns/vein_and_venule_pattern.yaml> "xsd:string"^^xsd:string)
AnnotationAssertion(<http://purl.org/dc/terms/title> <http://purl.obolibrary.org/obo/uberon/patterns/vein_and_venule_pattern.yaml> "vein_and_venule_pattern"^^xsd:string)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/uberon/patterns/vein_and_venule_pattern.yaml> "xsd:string"^^xsd:string)
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "xsd:string"^^xsd:string) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/uberon/patterns/vein_and_venule_pattern.yaml> "xsd:string"^^xsd:string)
Expand Down

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