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Adresses #3215 NTRs ureter #3347

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merged 5 commits into from
Sep 2, 2024
Merged

Adresses #3215 NTRs ureter #3347

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707b6a2
Adresses #3215 NTRs ureter
aleixpuigb Aug 28, 2024
ef53333
Fix wrong synonym
aleixpuigb Aug 28, 2024
609bf16
Fix wrong ORCID
aleixpuigb Aug 28, 2024
01db0b8
Merge branch 'master' into 3215_NTR_ureter_segment
aleixpuigb Aug 30, 2024
2db3ff6
Fix text definitions and add one dbxref for synonym
aleixpuigb Sep 2, 2024
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144 changes: 143 additions & 1 deletion src/ontology/uberon-edit.obo
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Expand Up @@ -72995,8 +72995,8 @@ id: UBERON:0003532
name: hindlimb skin
def: "A zone of skin that is part of a hindlimb [Automatically generated definition]." [OBOL:automatic]
synonym: "hind limb skin" EXACT [OBOL:automatic]
synonym: "lower limb skin" EXACT [https://orcid.org/0000-0002-0819-0473]
synonym: "lower limb skin" EXACT [FMA:23102]
synonym: "lower limb skin" EXACT [https://orcid.org/0000-0002-0819-0473]
synonym: "skin of hind limb" EXACT [OBOL:automatic]
synonym: "skin of hindlimb" EXACT [OBOL:automatic]
synonym: "skin of lower extremity" EXACT [OBOL:automatic]
Expand Down Expand Up @@ -224531,6 +224531,148 @@ relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 ! Aleix Puig-
relationship: located_in UBERON:8600025 ! intervillous space
property_value: dcterms-date "2024-04-15T10:05:35Z" xsd:dateTime

[Term]
id: UBERON:8600108
name: proximal ureter
def: "A segment of the ureter that extends from the renal pelvis to the common iliac artery bifurcation (to form the internal and external iliac arteries)." [PMID:30422575]
synonym: "abdominal ureter" EXACT [PMID:30422575]
synonym: "upper ureter" EXACT [PMID:30422575]
xref: FMA:15882
is_a: UBERON:0006555 ! excretory tube
relationship: continuous_with UBERON:8600109 ! distal ureter
relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 ! Aleix Puig-Barbé
relationship: dc-contributor https://orcid.org/0000-0001-7655-4833 ! Ellen Quardokus
relationship: dc-contributor https://orcid.org/0000-0002-4341-3265
relationship: dc-contributor https://orcid.org/0000-0003-2804-127X ! Sanjay Jain
relationship: part_of UBERON:0000056 ! ureter
property_value: dcterms-date "2024-08-28T13:51:59Z" xsd:dateTime

[Term]
id: UBERON:8600109
name: distal ureter
def: "A segment of the ureter that extends from the common iliac artery bifurcation to the bladder. From there, the ureter curves back and follows the lateral pelvic wall inferiorly to connect with the posterolateral bladder wall." [PMID:30422575]
synonym: "lower ureter" EXACT [PMID:30422575]
synonym: "pelvic ureter" EXACT [PMID:30422575]
xref: FMA:15883
is_a: UBERON:0006555 ! excretory tube
relationship: continuous_with UBERON:8600108 ! proximal ureter
relationship: continuous_with UBERON:8600110 ! intramural ureter
relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 ! Aleix Puig-Barbé
relationship: dc-contributor https://orcid.org/0000-0001-7655-4833 ! Ellen Quardokus
relationship: dc-contributor https://orcid.org/0000-0002-4341-3265
relationship: dc-contributor https://orcid.org/0000-0003-2804-127X ! Sanjay Jain
relationship: part_of UBERON:0000056 ! ureter
property_value: dcterms-date "2024-08-28T14:15:03Z" xsd:dateTime

[Term]
id: UBERON:8600110
name: intramural ureter
def: "The terminal segment of the ureter that is continuous with the distal ureter, lies where the ureter enters the bladder and extends within the bladder wall. The intramural ureter is aperistaltic, serving as a reflux-preventing mechanism, preventing the backflow of urine from the bladder into the ureters." [PMID:14142154, PMID:30422575]
synonym: "intravesical ureter" EXACT [doi:10.53347/rID-23183, PMID:33085409]
xref: FMA:77289
is_a: UBERON:0006555 ! excretory tube
relationship: continuous_with UBERON:8600109 ! distal ureter
relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 ! Aleix Puig-Barbé
relationship: dc-contributor https://orcid.org/0000-0001-7655-4833 ! Ellen Quardokus
relationship: dc-contributor https://orcid.org/0000-0002-4341-3265
relationship: dc-contributor https://orcid.org/0000-0003-2804-127X ! Sanjay Jain
relationship: part_of UBERON:0000056 ! ureter
property_value: dcterms-date "2024-08-28T14:39:53Z" xsd:dateTime

[Term]
id: UBERON:8600111
name: right distal ureter
def: "A distal ureter that is part of the right ureter." [PMID:30422575]
synonym: "right lower ureter" EXACT [PMID:30422575]
synonym: "right pelvic ureter" EXACT [PMID:30422575]
xref: FMA:15886
intersection_of: UBERON:8600109 ! distal ureter
intersection_of: part_of UBERON:0001222 ! right ureter
relationship: continuous_with UBERON:8600113 ! right proximal ureter
relationship: continuous_with UBERON:8600115 ! right intramural ureter
relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 ! Aleix Puig-Barbé
relationship: dc-contributor https://orcid.org/0000-0001-7655-4833 ! Ellen Quardokus
relationship: dc-contributor https://orcid.org/0000-0002-4341-3265
relationship: dc-contributor https://orcid.org/0000-0003-2804-127X ! Sanjay Jain
property_value: dcterms-date "2024-08-28T15:12:29Z" xsd:dateTime

[Term]
id: UBERON:8600112
name: left distal ureter
def: "A distal ureter that is part of the left ureter." [PMID:30422575]
synonym: "left lower ureter" EXACT [PMID:30422575]
synonym: "left pelvic ureter" EXACT [PMID:30422575]
xref: FMA:15887
intersection_of: UBERON:8600109 ! distal ureter
intersection_of: part_of UBERON:0001223 ! left ureter
relationship: continuous_with UBERON:8600114 ! left proximal ureter
relationship: continuous_with UBERON:8600116 ! left intramural ureter
relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 ! Aleix Puig-Barbé
relationship: dc-contributor https://orcid.org/0000-0001-7655-4833 ! Ellen Quardokus
relationship: dc-contributor https://orcid.org/0000-0002-4341-3265
relationship: dc-contributor https://orcid.org/0000-0003-2804-127X ! Sanjay Jain
property_value: dcterms-date "2024-08-28T15:15:32Z" xsd:dateTime

[Term]
id: UBERON:8600113
name: right proximal ureter
def: "A proximal ureter that is part of the right ureter." [PMID:30422575]
synonym: "right abdominal ureter" EXACT [PMID:30422575]
synonym: "right upper ureter" EXACT [PMID:30422575]
xref: FMA:15884
intersection_of: UBERON:8600108 ! proximal ureter
intersection_of: part_of UBERON:0001222 ! right ureter
relationship: continuous_with UBERON:8600111 ! right distal ureter
relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 ! Aleix Puig-Barbé
relationship: dc-contributor https://orcid.org/0000-0001-7655-4833 ! Ellen Quardokus
relationship: dc-contributor https://orcid.org/0000-0002-4341-3265
relationship: dc-contributor https://orcid.org/0000-0003-2804-127X ! Sanjay Jain
property_value: dcterms-date "2024-08-28T15:19:31Z" xsd:dateTime

[Term]
id: UBERON:8600114
name: left proximal ureter
def: "A proximal ureter that is part of the left ureter." [PMID:30422575]
synonym: "left abdominal ureter" EXACT [PMID:30422575]
synonym: "left upper ureter" EXACT [PMID:30422575]
xref: FMA:15885
intersection_of: UBERON:8600108 ! proximal ureter
intersection_of: part_of UBERON:0001223 ! left ureter
relationship: continuous_with UBERON:8600112 ! left distal ureter
relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 ! Aleix Puig-Barbé
relationship: dc-contributor https://orcid.org/0000-0001-7655-4833 ! Ellen Quardokus
relationship: dc-contributor https://orcid.org/0000-0002-4341-3265
relationship: dc-contributor https://orcid.org/0000-0003-2804-127X ! Sanjay Jain
property_value: dcterms-date "2024-08-28T15:19:51Z" xsd:dateTime

[Term]
id: UBERON:8600115
name: right intramural ureter
def: "An intramural ureter that is part of the right ureter." [PMID:30422575]
synonym: "right intravesical ureter" EXACT [doi:10.53347/rID-23183]
intersection_of: UBERON:8600110 ! intramural ureter
intersection_of: part_of UBERON:0001222 ! right ureter
relationship: continuous_with UBERON:8600111 ! right distal ureter
relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 ! Aleix Puig-Barbé
relationship: dc-contributor https://orcid.org/0000-0001-7655-4833 ! Ellen Quardokus
relationship: dc-contributor https://orcid.org/0000-0002-4341-3265
relationship: dc-contributor https://orcid.org/0000-0003-2804-127X ! Sanjay Jain
property_value: dcterms-date "2024-08-28T16:10:44Z" xsd:dateTime

[Term]
id: UBERON:8600116
name: left intramural ureter
def: "An intramural ureter that is part of the left ureter." [PMID:30422575]
synonym: "left intravesical ureter" EXACT [doi:10.53347/rID-23183]
intersection_of: UBERON:8600110 ! intramural ureter
intersection_of: part_of UBERON:0001223 ! left ureter
relationship: continuous_with UBERON:8600112 ! left distal ureter
relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 ! Aleix Puig-Barbé
relationship: dc-contributor https://orcid.org/0000-0001-7655-4833 ! Ellen Quardokus
relationship: dc-contributor https://orcid.org/0000-0002-4341-3265
relationship: dc-contributor https://orcid.org/0000-0003-2804-127X ! Sanjay Jain
property_value: dcterms-date "2024-08-28T16:10:50Z" xsd:dateTime

[Term]
id: UBERON:8850000
name: lumen of pulmonary alveolus
Expand Down
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