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OHSU CEDAR

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  1. scMKL scMKL Public

    Python package for single-cell analysis with multiple kernel learning.

    Jupyter Notebook 7

  2. TITAN TITAN Public

    Alex Chitsazan's package TITAN for scRNA-seq (Topic Inference of Transcriptionally Associated Networks), an unsupervised Bayesian topic modelling based approach utilizing Latent Dirichlet Allocatio…

    R 6 2

  3. miniMTI miniMTI Public

    Code for a deep learning model capable of identifying optimal reduced CyCIF marker panels and imputing additional markers

    Python 5

  4. qupath_monaillabel_plugin qupath_monaillabel_plugin Public

    Forked from qupath/qupath

    QuPath - Bioimage analysis & digital pathology

    Java 5 1

  5. unidex unidex Public

    python implementation of a universal demultiplexer built in mind for combinatorial indexing

    Python 3

  6. SlurmStats SlurmStats Public

    Tools to study sacct data to optimize Slurm Jobs

    Shell 3

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