Merge pull request #243 from open-ephys/update-library-0.5.0

Update library to 0.5.0, update workflows

Author: bparks13

.bonsai/Bonsai.config

@@ -7,7 +7,6 @@
     ],
     "Exclude": [
       "_site/*",
-      ".bonsai/*",
       "src/*"
     ]
   },

.bonsai/NuGet.config

@@ -32,7 +32,7 @@ jobs:
         run: dotnet tool restore
 
       - name: Setup Bonsai
-        working-directory: .bonsai
+        working-directory: src\bonsai-onix1\.bonsai
         run: .\Setup.ps1
 
       - name: Build Documentation

.bonsai/Setup.cmd

@@ -16,4 +16,12 @@ _*/
 Packages
 
 ## Lychee cache
-.lycheecache
+.lycheecache
+
+## Bonsai v2.9.0 saves editor/layout files here
+**/.bonsai/Settings/*
+
+## Saved files from example workflows
+**/*.bin
+**/*.raw
+**/*.csv

.bonsai/Setup.ps1

@@ -43,8 +43,9 @@ Download and install [git](https://git-scm.com/downloads) if it is not installed
     even after installing .NET as described previously in the readme, refer to [this comment](https://github.com/dotnet/core/issues/6095#issuecomment-809006602) for a potential fix. If you follow the instructions described in the comment, make sure you proceed in a terminal or command prompt opened after changing the environment variables.
 1. Set up a local Bonsai environment for automatically exporting SVGs, run Setup.ps1 in PowerShell (or, if not using PowerShell, run Setup.Cmd): 
     ``` console
-    ./.bonsai/Setup.ps1
-    ```    
+    cd .\src\bonsai-onix1\.bonsai\
+    ./Setup.ps1
+    ```
     If the above command yields the following error:
     ``` console
     ./Setup.ps1 : File C:\Users\User\...\bonsai-onix1-docs\Setup.ps1 cannot be loaded because running scripts is      

.github/workflows/DocLinkChecker.config

@@ -18,13 +18,14 @@ Default values for the headstage are:
     - This is also known as the **Bank A** `Channel Preset`
 - Setting `AP Gain` to 1000x
 - Setting `LFP gain` to 50x
-- Enabling the `Spike Filter`
-- Setting the `Reference` to *External*
+- Setting `Spike Filter` to `True`
+- Setting `Reference` to *External*
+- Setting `Invert Polarity` to `True`
 
 > [!IMPORTANT]
 > The workflow will not run unless gain calibration and ADC calibration files are provided. Click the `HeadstageNeuropixelsV1e` operator, expand `NeuropixelsV1e` in the properties pane, then choose the appropriate files by selecting either `GainCalibrationFile` or `AdcCalibrationFile` and clicking the <kbd>...</kbd> button.
 
 > [!TIP]
-> For additional details on how to manually configure the headstage, such as enabling specific electrodes for recording, or modify AP / LFP gain, check out the <xref:np1e_gui> page.
+> For additional details on how to manually configure the headstage, such as enabling specific electrodes for recording or modifying AP / LFP gain, check out the <xref:np1e_gui> page.
 
 [!INCLUDE [timestamp-info](../../../includes/configuration-timestamp.md)]