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    678 repositories

    • Synapse-Repository-Services

      Public
      The Synapse Repository Services project is the home of the JSON REST web services for Synapse.
      Java
      •
      Apache License 2.0
      •54•42•0•10•Updated Oct 25, 2025Oct 25, 2025

    • Synapse-Stack-Builder

      Public
      Project for building a complete Synapse Stack
      Java
      •
      Apache License 2.0
      •23•6•0•7•Updated Oct 25, 2025Oct 25, 2025

    • SynapseWebClient

      Public
      The web client of the Synapse REST service core
      JavaScript
      •
      Apache License 2.0
      •40•24•1•9•Updated Oct 25, 2025Oct 25, 2025

    • sage-monorepo

      Public
      ✨ Monorepo for OpenChallenges, Agora, and other open-source apps developed to advance open science and collaborative research.
      angularopenapimonorepofull-stackfairdeveloper-experiencenxagoradev-exspecification-first
      TypeScript
      •
      Apache License 2.0
      •15•26•125•8•Updated Oct 24, 2025Oct 24, 2025

    • Genie

      Public
      Validation and processing of GENIE files
      pythonetlgeniedpecomponc
      Python
      •
      MIT License
      •9•14•1•2•Updated Oct 24, 2025Oct 24, 2025

    • synapse-web-monorepo

      Public
      Monorepo for Synapse Web projects
      TypeScript
      •
      Apache License 2.0
      •30•9•4•29•Updated Oct 24, 2025Oct 24, 2025

    • genie-ddr

      Public
      An investigation into the prevalence of oncogenic DDR mutations in the GENIE database.
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 24, 2025Oct 24, 2025

    • genie-rw-response

      Public
      Evaluation of some potential real world response algorithms in GENIE BPC
      HTML
      •0•0•0•0•Updated Oct 24, 2025Oct 24, 2025

    • agora-data-tools

      Public
      A place for Agora's ETL and Data Testing
      Jupyter Notebook
      •
      Apache License 2.0
      •3•2•0•3•Updated Oct 24, 2025Oct 24, 2025

    • genie-bpc-pipeline

      Public
      GENIE BPC pipeline scripts
      genie
      R
      •
      MIT License
      •1•4•0•3•Updated Oct 24, 2025Oct 24, 2025

    • synapsePythonClient

      Public
      Programmatic interface to Synapse services for Python
      pythonsynapse
      Python
      •
      Apache License 2.0
      •72•76•2•11•Updated Oct 24, 2025Oct 24, 2025

    • snowflake

      Public
      Snowflake Administration, Transformations, and Analytics
      snowflake
      Python
      •
      Apache License 2.0
      •4•5•0•4•Updated Oct 24, 2025Oct 24, 2025

    • at-home-pd

      Public
      A project for handling scripts related to AT-HOME PD (syn12617210)
      R
      •3•0•3•0•Updated Oct 23, 2025Oct 23, 2025

    • synapseforms

      Public
      R Wrappers for Synapse Submission Forms
      R
      •
      Other
      •5•1•16•2•Updated Oct 23, 2025Oct 23, 2025

    • synapse-mcp

      Public
      0•0•0•1•Updated Oct 22, 2025Oct 22, 2025

    • BridgeWorkerPlatform

      Public
      General platform holding all services in Bridge
      Java
      •
      Other
      •13•1•0•3•Updated Oct 21, 2025Oct 21, 2025

    • Bridge-Exporter

      Public
      Worker app to aggregate Bridge uploads, survey answers, and health data daily, and export them to Synapse
      Java
      •
      Other
      •8•0•0•1•Updated Oct 21, 2025Oct 21, 2025

    • synapse-ops-core

      Public
      Synapse Ops scripts workflows and CDK+workflow for creating self-hosted runners
      Shell
      •
      Apache License 2.0
      •4•0•0•3•Updated Oct 21, 2025Oct 21, 2025

    • schematic

      Public
      Package for biomedical data model and metadata ingress management
      schemabiomedical-informaticsdata-ingress
      Python
      •
      MIT License
      •26•27•1•5•Updated Oct 20, 2025Oct 20, 2025

    • GENIE-Sponsored-Projects

      Public
      This repository contains processing code for GENIE sponsored projects used for creating cBioPortal files
      genie
      Python
      •
      MIT License
      •1•5•5•1•Updated Oct 20, 2025Oct 20, 2025

    • synapse-paper

      Public
      This repository contains the code executed for the synapse.org paper
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 20, 2025Oct 20, 2025

    • synapse-login-scipool

      Public
      scipoolsage-bionetworks-it
      Java
      •
      Apache License 2.0
      •3•0•0•1•Updated Oct 17, 2025Oct 17, 2025

    • data_curator_config

      Public
      Project configurations for the Data Curator App
      22•2•0•1•Updated Oct 16, 2025Oct 16, 2025

    • genie-data-model-planning

      Public
      R
      •0•0•0•0•Updated Oct 15, 2025Oct 15, 2025

    • synapse-login-aws-infra

      Public
      scipoolsage-bionetworks-it
      Apache License 2.0
      •5•0•0•0•Updated Oct 13, 2025Oct 13, 2025

    • genie-bpc-bladder-landscape-manu

      Public
      Analyses related to the GENIE BPC Bladder cohort. Intended for a landscape manuscript.
      R
      •0•1•0•0•Updated Oct 13, 2025Oct 13, 2025

    • iatlas-cbioportal-export

      Public
      ETL pipeline for processing and exporting iAtlas files to be cBioportal ingestion ready
      Python
      •0•1•0•0•Updated Oct 2, 2025Oct 2, 2025

    • agora-data-manager

      Public
      Tool to manage agora data
      Shell
      •
      Apache License 2.0
      •10•0•0•0•Updated Oct 1, 2025Oct 1, 2025

    • shiny-base

      Public
      Base Docker image for Shiny applications
      Dockerfile
      •1•0•0•0•Updated Oct 1, 2025Oct 1, 2025

    • scicomp-provisioner

      Public
      An service to auto provision resources
      Jinja
      •
      Apache License 2.0
      •45•1•0•0•Updated Sep 30, 2025Sep 30, 2025