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    16 repositories

    • SCRATCH-Annotation

      Public
      SCRATCH subworkflow for cell annotation
      Nextflow
      •4•0•0•1•Updated Dec 12, 2025Dec 12, 2025

    • SCRATCH-CNV

      Public
      SCRATCH subworkflow for CNV analysis
      Nextflow
      •1•0•0•0•Updated Nov 3, 2025Nov 3, 2025

    • SCRATCH-Batchcorrection_Evaluation

      Public
      Dockerfile
      •2•0•0•0•Updated Nov 3, 2025Nov 3, 2025

    • SCRATCH-CellTrajectory

      Public
      Dockerfile
      •2•0•0•0•Updated Nov 3, 2025Nov 3, 2025

    • SCRATCH-TumorHeterogeneity

      Public
      Nextflow
      •1•0•0•0•Updated Nov 3, 2025Nov 3, 2025

    • SCRATCH-QC

      Public
      SCRATCH subworkflow for align and quality control
      C++
      •
      GNU General Public License v3.0
      •3•0•1•2•Updated Oct 29, 2025Oct 29, 2025

    • SCRATCH-TCR

      Public
      SCRATCH subworkflow for integrating scRNA and scRNA data
      Nextflow
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Aug 12, 2024Aug 12, 2024

    • btc-scrna-pipeline

      Public
      A Nextflow pipeline for single-cell RNA-Seq dataset
      Groovy
      •
      MIT License
      •5•4•1•0•Updated Jul 25, 2024Jul 25, 2024

    • btc-mouse-pilot

      Public
      This repo contains all scripted used for the preliminary analysis of the BTC Mouse Pilot
      0•0•0•0•Updated Jul 18, 2024Jul 18, 2024

    • nf-quarto

      Public
      A template for pipeline development using Nextflow integrated with Quarto
      Nextflow
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Jul 15, 2024Jul 15, 2024

    • btc-sc-containers

      Public
      A repository containing all Dockerfile related to the single-cell pipeline
      Dockerfile
      •2•0•0•0•Updated Jan 31, 2024Jan 31, 2024

    • btc-sc-notebooks

      Public
      Scripts and Notebooks related to the Single-cell pipeline
      R
      •1•1•0•0•Updated Dec 7, 2023Dec 7, 2023

    • btc-sc-modules

      Public
      Nextflow
      •4•0•0•1•Updated Nov 15, 2023Nov 15, 2023

    • btc-scrna-training

      Public
      Syllabus for BTC scRNA hands-on training
      HTML
      •0•0•0•0•Updated Nov 15, 2023Nov 15, 2023

    • MultiMap

      Public
      MultiMap: A R package for mapping cells to reference contains batches
      R
      •
      Other
      •1•7•1•0•Updated Jun 27, 2023Jun 27, 2023

    • btc-sc-mvp

      Public
      A Nextflow pipeline to process single-cell datasets
      Nextflow
      •2•0•0•0•Updated May 9, 2023May 9, 2023