Repositories list

• software

  Public
  Dockerfiles used to create the docker images containing most of the software we use. One image, one software.

  Dockerfile

  •0•0•0•0•Updated Nov 13, 2025Nov 13, 2025

• AGEpy

  Public
  Bioinformatics tools for Python

  Python

  •

  MIT License

  •3•25•3•2•Updated Nov 13, 2025Nov 13, 2025

• myapp

  Public
  A backbone for flask-dash based apps.

  pythonflaskdash

  Python

  •

  MIT License

  •0•2•4•87•Updated Nov 9, 2025Nov 9, 2025

• jawm_demo

  Public
  Python

  •0•0•2•0•Updated Nov 6, 2025Nov 6, 2025

• jawm_template

  Public
  Python

  •0•0•0•0•Updated Nov 6, 2025Nov 6, 2025

• jawm_git_test

  Public
  Mock repo for jawm <git> functionality testing

  Python

  •0•0•0•0•Updated Oct 29, 2025Oct 29, 2025

• bit

  Public
  The [b]ermuda [i]nformation [t]riangle is a git-based tool for the management of code and data.

  project-managementdata-managementdata-sharing

  Python

  •

  MIT License

  •1•3•6•0•Updated Oct 28, 2025Oct 28, 2025

• flaski

  Public
  Get your science on a leash!

  pythonflaskplotly+ 4dashdatavisualizationdataanalysislifesciences

  Python

  •

  MIT License

  •11•29•21•1•Updated Oct 7, 2025Oct 7, 2025

• nextflow-rnaseq

  Public
  nextflow

  Shell

  •1•1•0•0•Updated Oct 1, 2025Oct 1, 2025

• nf-deseq2

  Public
  Nextflow

  •0•0•2•0•Updated Aug 19, 2025Aug 19, 2025

• nf-kallisto

  Public
  Nextflow

  •0•0•0•0•Updated Aug 13, 2025Aug 13, 2025

• pyflaski

  Public
  Jupyter Notebook

  •

  MIT License

  •0•1•2•0•Updated Jun 25, 2025Jun 25, 2025

• nextflow-crispr

  Public
  Shell

  •0•0•0•0•Updated Mar 27, 2025Mar 27, 2025

• microscopy_bead_project

  Public
  Python

  •0•0•0•0•Updated Mar 11, 2025Mar 11, 2025

• cluster_first_steps

  Public
  Using the MPI-AGE HPC cluster and computing services.

  Shell

  •0•5•1•0•Updated Jan 31, 2025Jan 31, 2025

• nf-mageck

  Public
  Nextflow

  •0•0•0•0•Updated Jan 21, 2025Jan 21, 2025

• presentations-tutorials

  Public
  Presentations an tutorials in reveal.js

  MIT License

  •1•1•0•0•Updated Jan 6, 2025Jan 6, 2025

• mpg-age-bioinformatics.github.io

  Public
  home page

  bioinformatics

  HTML

  •

  Apache License 2.0

  •2•0•1•6•Updated Dec 16, 2024Dec 16, 2024

• nf-featurecounts

  Public
  Nextflow

  •0•0•0•0•Updated Nov 18, 2024Nov 18, 2024

• myapp-gtex

  Public
  Python

  •0•0•0•0•Updated Oct 4, 2024Oct 4, 2024

• nf-crisprcleanr

  Public
  Nextflow

  •0•0•0•0•Updated Sep 24, 2024Sep 24, 2024

• nextflow-IntronRetention

  Public
  Shell

  •0•0•0•0•Updated Sep 9, 2024Sep 9, 2024

• nextflow-ATACSeq

  Public
  Shell

  •0•0•0•0•Updated Aug 13, 2024Aug 13, 2024

• nf-sajr

  Public
  Nextflow

  •1•0•0•0•Updated Jul 18, 2024Jul 18, 2024

• nextflow-alternative-splicing

  Public
  Shell

  •1•0•0•0•Updated Jul 18, 2024Jul 18, 2024

• nf-bedGraphToBigWig

  Public
  Nextflow

  •0•0•0•0•Updated Jul 18, 2024Jul 18, 2024

• nf-star

  Public
  Nextflow

  •1•0•0•0•Updated Jul 17, 2024Jul 17, 2024

• nextflow-issues

  Public
  0•0•0•0•Updated Jul 17, 2024Jul 17, 2024

• nf-acer

  Public
  Nextflow

  •0•0•0•0•Updated Jul 11, 2024Jul 11, 2024

• nf-maude

  Public
  Nextflow

  •0•0•0•0•Updated Jul 11, 2024Jul 11, 2024