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    • GitHub pages site
      SCSS
      5200Updated Feb 20, 2026Feb 20, 2026
    • A Java library to link QuPath and ImgLib2
      Java
      1111Updated Feb 19, 2026Feb 19, 2026
    • qupath-docs

      Public
      QuPath documentation
      Python
      252173Updated Feb 19, 2026Feb 19, 2026
    • qupath

      Public
      QuPath - Open-source bioimage analysis for research
      Java
      3311.3k333Updated Feb 17, 2026Feb 17, 2026
    • qubalab

      Public
      Lab for quantitative bioimage analysis experiments in Python
      Python
      51900Updated Feb 16, 2026Feb 16, 2026
    • qupath-extension-omero

      Public
      QuPath extension to work with images through OMERO's APIs
      Java
      2832Updated Feb 16, 2026Feb 16, 2026
    • A simple JavaFX Javadoc viewer
      Java
      1000Updated Feb 11, 2026Feb 11, 2026
    • QuPath extension to work with images through OMERO's web API
      Java
      111080Updated Feb 10, 2026Feb 10, 2026
    • The catalog containing QuPath extensions developed by the QuPath team
      1120Updated Jan 28, 2026Jan 28, 2026
    • The official QuPath extension for InstanSeg
      Java
      52970Updated Jan 21, 2026Jan 21, 2026
    • 0000Updated Jan 16, 2026Jan 16, 2026
    • A manager for catalogs and extensions.
      Java
      2000Updated Jan 12, 2026Jan 12, 2026
    • actions

      Public
      GitHub actions for QuPath and related repositories
      Shell
      1000Updated Jan 7, 2026Jan 7, 2026
    • QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/
      Java
      92811Updated Dec 3, 2025Dec 3, 2025
    • Reusable JavaFX tools for QuPath (and beyond)
      Java
      3610Updated Nov 25, 2025Nov 25, 2025
    • A QuPath extension for working with Deep Java Library (https://djl.ai)
      Java
      6920Updated Nov 11, 2025Nov 11, 2025
    • Support for parsing the BioImage Model Zoo spec in Java
      Java
      2020Updated Nov 5, 2025Nov 5, 2025
    • Jupyter Notebook
      1700Updated Nov 5, 2025Nov 5, 2025
    • A QuPath extension to help with learning the software
      Java
      3111Updated Nov 4, 2025Nov 4, 2025
    • Java
      2630Updated Oct 28, 2025Oct 28, 2025
    • A QuPath extension to combine TIFF images
      Java
      0110Updated Aug 21, 2025Aug 21, 2025
    • Template to help create a new QuPath extension
      Java
      142100Updated Aug 12, 2025Aug 12, 2025
    • QuPath extension to interactively align images
      Java
      82610Updated Aug 7, 2025Aug 7, 2025
    • A QuPath extension for linking up to Python via Py4J (https://www.py4j.org)
      Java
      3100Updated Jul 28, 2025Jul 28, 2025
    • Gradle plugins to help create QuPath extensions
      Java
      1200Updated Jul 2, 2025Jul 2, 2025
    • A QuPath extension for working with the Bioimage Model Zoo (https://bioimage.io)
      Java
      3620Updated Jul 2, 2025Jul 2, 2025
    • QuPath extension using JPen for graphics tablet input
      Java
      4100Updated Jul 2, 2025Jul 2, 2025
    • A QuPath extension to run the Liverquant algorithm
      Java
      1000Updated Jul 2, 2025Jul 2, 2025
    • A QuPath extension to help with making screenshots
      Java
      2100Updated Jul 2, 2025Jul 2, 2025
    • QuPath extension to run StarDist nucleus detection
      Java
      74820Updated Jul 2, 2025Jul 2, 2025