VarFish
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36 repositories
mehari
PublicVEP-like tool for sequence ontology and HGVS annotation of VCF filesvarfish-server
PublicVarFish: comprehensive DNA variant analysis for diagnostics and researchannonars
PublicGenome annotation based on Rust and RocksDBcada-prio
PublicRe-implementation of the CADA phenotype-based prioritization algorithmclinvar-data-jsonl
Publicannonars-data-clinvar
PublicClinvar data builds for annonarsvarfish-db-downloader
PublicDownload public databases for VarFishhgvs-rs
PublicA port of biocommons/hgvs to the Rust programming languagevarfish-dev-docs
PublicVarFish software development documentationvarfish-docker-compose
Public(Next-generation; in-development) VarFish Docker Composemehari-data-tx
Publicbiocommons-bioutils-rs
Public(Partial) port of biocommons/bioutils to Rustrocksdb-utils-lookup
PublicUtilities for using RocksDB as read-only lookup table (after initial bulk import)clinvar-this
Publicvarfish-server-worker
PublicRust-based background worker for varfish-serverviguno
PublicVersatile Interface for Genetics Utilization of Nice Ontologiesseqrepo-rs
PublicA port of biocommons/seqrepo to the Rust programming languagevarfish-cli
PublicVarFish REST API client (CLI + Python package)cadd-rest-api
PublicSimple REST API wrapper for CADD-scriptsphenopacket-schema
Publicvarfish-installer
PublicScript and Docker container for VarFish installation and data downloadscarus
PublicAutomated evaluation of ACMG rulesvarfish-landing-page
Publiccadd-rest-api-mock
PublicMocking the CADD REST API server for VarFish developmentvarfish-org.github.io
Public- Setup VarFish as using Docker Compose
varfish-data-igsr
PublicRepository for building IGSR data sets for use in VarFishvarfish-anno
Public archiveDEPRECATED Convert annotation database files to Var:fish: import formatvarfish-installer-LEGACY
Public archiveDEPRECATED, use https://github.com/bihealth/varfish-docker-compose insteadvarfish-annotator
Public archive(Legacy) Annotate variants for import into VarFish server.
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