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edward-burn committed Jan 13, 2025
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159 changes: 89 additions & 70 deletions _book/cdm_reference.html

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12 changes: 6 additions & 6 deletions _book/exploring_the_cdm.html
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Expand Up @@ -272,7 +272,7 @@ <h1 class="title"><span class="chapter-number">6</span>&nbsp; <span class="chapt
</header>


<p>For this chapter, lets again use the synthetic Covid-19 dataset.</p>
<p>For this chapter, we’ll use a synthetic Covid-19 dataset.</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb1"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="fu">library</span>(DBI)</span>
<span id="cb1-2"><a href="#cb1-2" aria-hidden="true" tabindex="-1"></a><span class="fu">library</span>(dbplyr)</span>
Expand Down Expand Up @@ -323,7 +323,7 @@ <h2 data-number="6.1" class="anchored" data-anchor-id="counting-people"><span cl
<span id="cb10-2"><a href="#cb10-2" aria-hidden="true" tabindex="-1"></a> <span class="fu">count</span>()</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-stdout">
<pre><code># Source: SQL [?? x 1]
# Database: DuckDB v1.1.3 [eburn@Windows 10 x64:R 4.4.0/C:\Users\eburn\AppData\Local\Temp\Rtmpu2l2kh\file9464432311c8.duckdb]
# Database: DuckDB v1.1.3 [eburn@Windows 10 x64:R 4.4.0/C:\Users\eburn\AppData\Local\Temp\RtmpuKHshJ\file655059e45234.duckdb]
n
&lt;dbl&gt;
1 10754</code></pre>
Expand Down Expand Up @@ -366,7 +366,7 @@ <h2 data-number="6.1" class="anchored" data-anchor-id="counting-people"><span cl
<div class="cell-output cell-output-stdout">
<pre><code>Rows: ??
Columns: 10
Database: DuckDB v1.1.3 [eburn@Windows 10 x64:R 4.4.0/C:\Users\eburn\AppData\Local\Temp\Rtmpu2l2kh\file9464432311c8.duckdb]
Database: DuckDB v1.1.3 [eburn@Windows 10 x64:R 4.4.0/C:\Users\eburn\AppData\Local\Temp\RtmpuKHshJ\file655059e45234.duckdb]
$ concept_id &lt;int&gt; 45756805, 45756804, 45756803, 45756802, 45756801, 457…
$ concept_name &lt;chr&gt; "Pediatric Cardiology", "Pediatric Anesthesiology", "…
$ domain_id &lt;chr&gt; "Provider", "Provider", "Provider", "Provider", "Prov…
Expand All @@ -386,7 +386,7 @@ <h2 data-number="6.1" class="anchored" data-anchor-id="counting-people"><span cl
<div class="cell-output cell-output-stdout">
<pre><code>Rows: ??
Columns: 6
Database: DuckDB v1.1.3 [eburn@Windows 10 x64:R 4.4.0/C:\Users\eburn\AppData\Local\Temp\Rtmpu2l2kh\file9464432311c8.duckdb]
Database: DuckDB v1.1.3 [eburn@Windows 10 x64:R 4.4.0/C:\Users\eburn\AppData\Local\Temp\RtmpuKHshJ\file655059e45234.duckdb]
$ concept_id_1 &lt;int&gt; 35804314, 35804314, 35804314, 35804327, 35804327, 358…
$ concept_id_2 &lt;int&gt; 912065, 42542145, 42542145, 35803584, 42542145, 42542…
$ relationship_id &lt;chr&gt; "Has modality", "Has accepted use", "Is current in", …
Expand All @@ -399,7 +399,7 @@ <h2 data-number="6.1" class="anchored" data-anchor-id="counting-people"><span cl
<div class="cell-output cell-output-stdout">
<pre><code>Rows: ??
Columns: 4
Database: DuckDB v1.1.3 [eburn@Windows 10 x64:R 4.4.0/C:\Users\eburn\AppData\Local\Temp\Rtmpu2l2kh\file9464432311c8.duckdb]
Database: DuckDB v1.1.3 [eburn@Windows 10 x64:R 4.4.0/C:\Users\eburn\AppData\Local\Temp\RtmpuKHshJ\file655059e45234.duckdb]
$ ancestor_concept_id &lt;int&gt; 375415, 727760, 735979, 438112, 529411, 14196…
$ descendant_concept_id &lt;int&gt; 4335743, 2056453, 41070383, 36566114, 4326940…
$ min_levels_of_separation &lt;int&gt; 4, 1, 3, 2, 3, 3, 4, 3, 2, 5, 1, 3, 4, 2, 2, …
Expand Down Expand Up @@ -501,7 +501,7 @@ <h2 data-number="6.3" class="anchored" data-anchor-id="summarising-clinical-reco
<div class="cell-output cell-output-stdout">
<pre><code>Rows: ??
Columns: 6
Database: DuckDB v1.1.3 [eburn@Windows 10 x64:R 4.4.0/C:\Users\eburn\AppData\Local\Temp\Rtmpu2l2kh\file9464432311c8.duckdb]
Database: DuckDB v1.1.3 [eburn@Windows 10 x64:R 4.4.0/C:\Users\eburn\AppData\Local\Temp\RtmpuKHshJ\file655059e45234.duckdb]
$ min_year_of_birth &lt;int&gt; 1923
$ q05_year_of_birth &lt;dbl&gt; 1927
$ mean_year_of_birth &lt;dbl&gt; 1971
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4 changes: 2 additions & 2 deletions _book/index.html
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Expand Up @@ -7,7 +7,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">

<meta name="author" content="Edward Burn, Adam Black, Berta Raventós, Yuchen Guo, Mike Du, Kim López-Güell, Núria Mercadé-Besora, Martí Català">
<meta name="dcterms.date" content="2025-01-11">
<meta name="dcterms.date" content="2025-01-13">

<title>Tidy R programming with databases: applications with the OMOP common data model</title>
<style>
Expand Down Expand Up @@ -244,7 +244,7 @@ <h1 class="title">Tidy R programming with databases: applications with the OMOP
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">January 11, 2025</p>
<p class="date">January 13, 2025</p>
</div>
</div>

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12 changes: 6 additions & 6 deletions _book/search.json

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