chore(deps): update dependency snakemake to v8.29.0

[renovate]

This PR contains the following updates:

Package	Change	Age	Adoption	Passing	Confidence
snakemake	8.28.0 -> 8.29.0

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Release Notes

snakemake/snakemake (snakemake)

v8.29.0

Compare Source

Features

• provide mechanism to link between report items (snakemake.report_href, see docs) (#​3224) (a024e60)
• toggles for binary labels in report (#​3296) (7690998)

Bug Fixes

• add missing @​conda annotations (#​3298) (0b541cc)
• properly handle remote storage when waiting for pipes (#​3317) (9f7e092)
• provide proper error messages if output file preparation (pipe, mkdir) fails (#​3309) (77ef176)
• record file extension (e.g. .tsv) in between workflow cache records in order to avoid that files of the wrong format are erroneously returned by the cache. This will lead to some cache misses. But avoiding errors induced by the previous behavior of ignoring file extensions when seeking for cache records is more important. (#​3314) (4912f00)
• sort results lexicographically by labels in their order of appearance (#​3293) (a19a0ac)

Documentation

• update best practices (7270eb3)

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Configuration

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[github-actions]

🦙 MegaLinter status: ⚠️ WARNING

Descriptor	Linter	Files	Fixed	Errors	Warnings	Elapsed time
✅ API	spectral	1		0	0	1.53s
⚠️ BASH	bash-exec	6		1	0	0.01s
✅ BASH	shellcheck	6		0	0	0.17s
✅ BASH	shfmt	6	0	0	0	0.71s
✅ COPYPASTE	jscpd	yes		no	no	2.87s
✅ DOCKERFILE	hadolint	129		0	0	28.15s
✅ JSON	jsonlint	20		0	0	0.2s
✅ JSON	v8r	22		0	0	14.1s
⚠️ MARKDOWN	markdownlint	267	0	302	0	21.2s
✅ MARKDOWN	markdown-table-formatter	267	0	0	0	165.62s
⚠️ PYTHON	bandit	215		66	0	3.71s
✅ PYTHON	black	215	0	0	0	4.78s
✅ PYTHON	flake8	215		0	0	2.11s
✅ PYTHON	isort	215	0	0	0	1.37s
✅ PYTHON	mypy	215		0	0	12.07s
✅ PYTHON	pylint	215		0	0	28.74s
✅ PYTHON	ruff	215	0	0	0	0.8s
✅ REPOSITORY	checkov	yes		no	no	34.81s
✅ REPOSITORY	git_diff	yes		no	no	0.46s
⚠️ REPOSITORY	grype	yes		31	no	13.46s
✅ REPOSITORY	secretlint	yes		no	no	10.56s
✅ REPOSITORY	trivy	yes		no	no	17.67s
✅ REPOSITORY	trivy-sbom	yes		no	no	0.63s
⚠️ REPOSITORY	trufflehog	yes		1	no	56.83s
✅ SPELL	cspell	718		0	0	12.0s
⚠️ SPELL	lychee	349		28	0	69.74s
✅ XML	xmllint	3	0	0	0	0.87s
✅ YAML	prettier	160	0	0	0	3.68s
✅ YAML	v8r	102		0	0	14.92s
✅ YAML	yamllint	161		0	0	2.96s

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