Prepare release (refresh imports)

pato-ontology · Dec 3, 2019 · 42ec0b6 · 42ec0b6
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commit 42ec0b6
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diff --git a/imports/chebi_import.json b/imports/chebi_import.json
@@ -139,15 +139,6 @@
       "id" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId",
       "type" : "PROPERTY",
       "lbl" : "has_alternative_id"
-    }, {
-      "id" : "http://purl.obolibrary.org/obo/chebi#3_STAR",
-      "meta" : {
-        "basicPropertyValues" : [ {
-          "pred" : "http://www.w3.org/2000/01/rdf-schema#comment",
-          "val" : "Manually annotated by ChEBI Team"
-        } ]
-      },
-      "type" : "PROPERTY"
     } ],
     "edges" : [ {
       "sub" : "http://purl.obolibrary.org/obo/CHEBI_46662",
@@ -163,7 +154,7 @@
       "subsets" : [ ],
       "xrefs" : [ ],
       "basicPropertyValues" : [ ],
-      "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-10-31/imports/chebi_import.owl"
+      "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-12-03/imports/chebi_import.owl"
     },
     "equivalentNodesSets" : [ ],
     "logicalDefinitionAxioms" : [ ],

diff --git a/imports/chebi_import.obo b/imports/chebi_import.obo
@@ -1,6 +1,6 @@
 format-version: 1.2
-data-version: pato/releases/2019-10-31/imports/chebi_import.owl
-subsetdef: 3_STAR "Manually annotated by ChEBI Team"
+data-version: pato/releases/2019-12-03/imports/chebi_import.owl
+subsetdef: 3_STAR ""
 ontology: pato/imports/chebi_import
 
 [Term]

diff --git a/imports/chebi_import.owl b/imports/chebi_import.owl
@@ -10,7 +10,7 @@
      xmlns:chebi="http://purl.obolibrary.org/obo/chebi#3"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/pato/imports/chebi_import.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/pato/releases/2019-10-31/imports/chebi_import.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/pato/releases/2019-12-03/imports/chebi_import.owl"/>
     </owl:Ontology>
 
 
@@ -49,7 +49,6 @@
     <!-- http://purl.obolibrary.org/obo/chebi#3_STAR -->
 
     <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/chebi#3_STAR">
-        <rdfs:comment>Manually annotated by ChEBI Team</rdfs:comment>
         <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
     </owl:AnnotationProperty>
 
@@ -63,12 +62,6 @@
 
 
 
-    <!-- http://www.geneontology.org/formats/oboInOwl#date -->
-
-    <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#date"/>
-
-
-
     <!-- http://www.geneontology.org/formats/oboInOwl#default-namespace -->
 
     <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#default-namespace"/>
@@ -151,12 +144,6 @@
 
 
 
-    <!-- http://www.geneontology.org/formats/oboInOwl#saved-by -->
-
-    <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#saved-by"/>
-
-
-
     <!-- http://www.geneontology.org/formats/oboInOwl#shorthand -->
 
     <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#shorthand">

diff --git a/imports/go_import.json b/imports/go_import.json
@@ -3877,14 +3877,14 @@
       "sub" : "http://purl.obolibrary.org/obo/GO_0098772",
       "pred" : "http://purl.obolibrary.org/obo/BFO_0000050",
       "obj" : "http://purl.obolibrary.org/obo/GO_0065009"
-    }, {
-      "sub" : "http://purl.obolibrary.org/obo/GO_2000272",
-      "pred" : "is_a",
-      "obj" : "http://purl.obolibrary.org/obo/GO_0044092"
     }, {
       "sub" : "http://purl.obolibrary.org/obo/GO_0010646",
       "pred" : "http://purl.obolibrary.org/obo/RO_0002211",
       "obj" : "http://purl.obolibrary.org/obo/GO_0007154"
+    }, {
+      "sub" : "http://purl.obolibrary.org/obo/GO_2000272",
+      "pred" : "is_a",
+      "obj" : "http://purl.obolibrary.org/obo/GO_0044092"
     }, {
       "sub" : "http://purl.obolibrary.org/obo/GO_0005622",
       "pred" : "is_a",
@@ -3945,14 +3945,14 @@
       "sub" : "http://purl.obolibrary.org/obo/GO_0023056",
       "pred" : "is_a",
       "obj" : "http://purl.obolibrary.org/obo/GO_0023051"
-    }, {
-      "sub" : "http://purl.obolibrary.org/obo/GO_0065009",
-      "pred" : "http://purl.obolibrary.org/obo/RO_0002211",
-      "obj" : "http://purl.obolibrary.org/obo/GO_0003674"
     }, {
       "sub" : "http://purl.obolibrary.org/obo/GO_0009893",
       "pred" : "is_a",
       "obj" : "http://purl.obolibrary.org/obo/GO_0019222"
+    }, {
+      "sub" : "http://purl.obolibrary.org/obo/GO_0065009",
+      "pred" : "http://purl.obolibrary.org/obo/RO_0002211",
+      "obj" : "http://purl.obolibrary.org/obo/GO_0003674"
     }, {
       "sub" : "http://purl.obolibrary.org/obo/GO_0043085",
       "pred" : "is_a",
@@ -4689,22 +4689,18 @@
       "sub" : "http://purl.obolibrary.org/obo/GO_0043229",
       "pred" : "http://purl.obolibrary.org/obo/BFO_0000050",
       "obj" : "http://purl.obolibrary.org/obo/GO_0005622"
-    }, {
-      "sub" : "http://purl.obolibrary.org/obo/GO_0010562",
-      "pred" : "http://purl.obolibrary.org/obo/RO_0002213",
-      "obj" : "http://purl.obolibrary.org/obo/GO_0006793"
     }, {
       "sub" : "http://purl.obolibrary.org/obo/GO_0010563",
       "pred" : "http://purl.obolibrary.org/obo/RO_0002212",
       "obj" : "http://purl.obolibrary.org/obo/GO_0006793"
+    }, {
+      "sub" : "http://purl.obolibrary.org/obo/GO_0010562",
+      "pred" : "http://purl.obolibrary.org/obo/RO_0002213",
+      "obj" : "http://purl.obolibrary.org/obo/GO_0006793"
     }, {
       "sub" : "http://purl.obolibrary.org/obo/GO_0042325",
       "pred" : "is_a",
       "obj" : "http://purl.obolibrary.org/obo/GO_0019220"
-    }, {
-      "sub" : "http://purl.obolibrary.org/obo/GO_0016301",
-      "pred" : "http://purl.obolibrary.org/obo/BFO_0000050",
-      "obj" : "http://purl.obolibrary.org/obo/GO_0016310"
     }, {
       "sub" : "http://purl.obolibrary.org/obo/GO_0010647",
       "pred" : "http://purl.obolibrary.org/obo/RO_0002213",
@@ -4713,6 +4709,10 @@
       "sub" : "http://purl.obolibrary.org/obo/GO_0010648",
       "pred" : "http://purl.obolibrary.org/obo/RO_0002212",
       "obj" : "http://purl.obolibrary.org/obo/GO_0007154"
+    }, {
+      "sub" : "http://purl.obolibrary.org/obo/GO_0016301",
+      "pred" : "http://purl.obolibrary.org/obo/BFO_0000050",
+      "obj" : "http://purl.obolibrary.org/obo/GO_0016310"
     }, {
       "sub" : "http://purl.obolibrary.org/obo/GO_0071944",
       "pred" : "is_a",
@@ -4811,7 +4811,7 @@
       "subsets" : [ ],
       "xrefs" : [ ],
       "basicPropertyValues" : [ ],
-      "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-10-31/imports/go_import.owl"
+      "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-12-03/imports/go_import.owl"
     },
     "equivalentNodesSets" : [ ],
     "logicalDefinitionAxioms" : [ {
@@ -5067,17 +5067,17 @@
         "fillerId" : "http://purl.obolibrary.org/obo/GO_0005488"
       } ]
     }, {
-      "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048518",
+      "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048519",
       "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ],
       "restrictions" : [ {
-        "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213",
+        "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212",
         "fillerId" : "http://purl.obolibrary.org/obo/GO_0008150"
       } ]
     }, {
-      "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048519",
+      "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048518",
       "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ],
       "restrictions" : [ {
-        "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212",
+        "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213",
         "fillerId" : "http://purl.obolibrary.org/obo/GO_0008150"
       } ]
     }, {
@@ -5088,17 +5088,17 @@
         "fillerId" : "http://purl.obolibrary.org/obo/GO_0009987"
       } ]
     }, {
-      "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009968",
+      "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009967",
       "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ],
       "restrictions" : [ {
-        "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212",
+        "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213",
         "fillerId" : "http://purl.obolibrary.org/obo/GO_0007165"
       } ]
     }, {
-      "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009967",
+      "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009968",
       "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ],
       "restrictions" : [ {
-        "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213",
+        "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212",
         "fillerId" : "http://purl.obolibrary.org/obo/GO_0007165"
       } ]
     }, {
@@ -5151,17 +5151,17 @@
         "fillerId" : "http://purl.obolibrary.org/obo/GO_0003824"
       } ]
     }, {
-      "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043085",
+      "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043086",
       "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ],
       "restrictions" : [ {
-        "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213",
+        "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212",
         "fillerId" : "http://purl.obolibrary.org/obo/GO_0003824"
       } ]
     }, {
-      "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043086",
+      "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043085",
       "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ],
       "restrictions" : [ {
-        "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212",
+        "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213",
         "fillerId" : "http://purl.obolibrary.org/obo/GO_0003824"
       } ]
     }, {

diff --git a/imports/go_import.obo b/imports/go_import.obo
@@ -1,5 +1,5 @@
 format-version: 1.2
-data-version: pato/releases/2019-10-31/imports/go_import.owl
+data-version: pato/releases/2019-12-03/imports/go_import.owl
 subsetdef: gocheck_do_not_annotate "Term not to be used for direct annotation"
 subsetdef: gocheck_do_not_manually_annotate "Term not to be used for direct manual annotation"
 subsetdef: goslim_agr "AGR slim"

diff --git a/imports/go_import.owl b/imports/go_import.owl
@@ -11,7 +11,7 @@
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/pato/imports/go_import.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/pato/releases/2019-10-31/imports/go_import.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/pato/releases/2019-12-03/imports/go_import.owl"/>
     </owl:Ontology>
 
 
@@ -2649,7 +2649,7 @@
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
         <owl:annotatedTarget>A prolongation or process extending from a cell, e.g. a flagellum or axon.</owl:annotatedTarget>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:jl</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://www.cogsci.princeton.edu/~wn/</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>http://www.cogsci.princeton.edu/~wn/</oboInOwl:hasDbXref>
     </owl:Axiom>