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Different values for CheckM when tests are run locally with Docker or Apptainer

invalidThis doesn't seem rightThis doesn't seem right

Status: Open.

#185 In phac-nml/mikrokondo;

· mattheww95 opened on Aug 15, 2025

IRIDA-Next: Require a unique meta column

bugSomething isn't workingSomething isn't working

Status: Open.

#176 In phac-nml/mikrokondo;

· sgsutcliffe opened on Jun 24, 2025

Missing Kraken2 Speciation results in IRIDANext

Status: Open.

#167 In phac-nml/mikrokondo;

· mattheww95 opened on Apr 30, 2025

Kraken2 default confidence value

enhancementNew feature or requestNew feature or request

Status: Open.

#162 In phac-nml/mikrokondo;

· mattheww95 opened on Apr 22, 2025

Use Dorado instead of Medaka for polishing.

enhancementNew feature or requestNew feature or request

Status: Open.

#151 In phac-nml/mikrokondo;

· mattheww95 opened on Feb 14, 2025

Rename several metadata fields

Status: Open.

#148 In phac-nml/mikrokondo;

· dfornika opened on Feb 3, 2025

Integrate Autocycler for hybrid assembly polishing

enhancementNew feature or requestNew feature or request

Status: Open.

#147 In phac-nml/mikrokondo;

· mattheww95 opened on Jan 3, 2025

Change locidex default from <code>normal</code> to <code>conservative</code>

enhancementNew feature or requestNew feature or request

Status: Open.

#144 In phac-nml/mikrokondo;

· mattheww95 opened on Nov 27, 2024

Run additional abricate databases

enhancementNew feature or requestNew feature or request

Status: Open.

#139 In phac-nml/mikrokondo;

· mattheww95 opened on Oct 23, 2024

Add mikrokondo-tools samplesheet to docs

enhancementNew feature or requestNew feature or request

Status: Open.

#138 In phac-nml/mikrokondo;

· mattheww95 opened on Oct 23, 2024

Upgrade to fastplong for nanopore workflow

enhancementNew feature or requestNew feature or request

Status: Open.

#136 In phac-nml/mikrokondo;

· mattheww95 opened on Oct 21, 2024

Incorporate database hashes or container has in output

enhancementNew feature or requestNew feature or request

Status: Open.

#135 In phac-nml/mikrokondo;

· mattheww95 opened on Oct 21, 2024