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Update boehringer company logo on website #214

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merged 1 commit into from
Apr 23, 2024

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mattkorb
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@mattkorb mattkorb commented Apr 9, 2024

Boehringer Ingelheim recently changed the company colors and the logo.

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github-actions bot commented Apr 9, 2024

Unit Tests Summary

  1 files   29 suites   1m 9s ⏱️
124 tests 123 ✅   0 💤 1 ❌
463 runs  344 ✅ 116 💤 3 ❌

For more details on these failures, see this check.

Results for commit cbf0eba.

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github-actions bot commented Apr 9, 2024

Unit Test Performance Difference

Test Suite $Status$ Time on main $±Time$ $±Tests$ $±Skipped$ $±Failures$ $±Errors$
fda-fig_14 👶 $+3.29$ $+11$ $+4$ $0$ $0$
fda-table_09 💔 $1.41$ $+7.02$ $+32$ $+2$ $+3$ $0$
fda-table_22 👶 $+1.76$ $+8$ $+4$ $0$ $0$
fda-table_36 👶 $+3.73$ $+15$ $+5$ $0$ $0$
fda-table_38 👶 $+2.55$ $+12$ $+3$ $0$ $0$
Additional test case details
Test Suite $Status$ Time on main $±Time$ Test Case
fda-fig_14 👶 $+0.89$ Figure_14_generation_works_with_custom_values
fda-fig_14 👶 $+1.16$ Figure_14_generation_works_with_default_values
fda-fig_14 👶 $+0.94$ Figure_14_generation_works_with_ggtheme_argument_specified
fda-fig_14 👶 $+0.29$ Figure_14_generation_works_with_no_table
fda-table_09 👶 $+1.31$ make_table_09_tplyr_assigns_column_headers_correctly_to_the_arm_groups
fda-table_09 👶 $+0.41$ make_table_09_tplyr_considers_annotations_if_tplyr_raw_FALSE
fda-table_09 👶 $+0.76$ make_table_09_tplyr_considers_lbl_soc_var_and_lbl_pref_var_parameters
fda-table_09 👶 $+0.75$ make_table_09_tplyr_provides_a_total_column_based_on_the_lbl_overall_parameter
fda-table_09 👶 $+0.73$ make_table_09_tplyr_provides_risk_difference_columns_based_on_the_risk_diff_pairs_parameter
fda-table_09 👶 $+0.79$ make_table_09_tplyr_provides_total_column_counts_based_on_the_alt_count_df_parameter
fda-table_09 👶 $+0.70$ make_table_09_tplyr_prunes_all_zero_rows_based_on_the_prune_0_parameter
fda-table_09 👶 $+0.49$ make_table_09_tplyr_returns_a_gt_object_when_tplyr_raw_FALSE
fda-table_09 👶 $+0.40$ make_table_09_tplyr_returns_a_tibble_when_tplyr_raw_TRUE
fda-table_09 👶 $+0.71$ make_table_09_tplyr_shows_column_counts_based_on_the_show_colcounts_parameter
fda-table_22 👶 $+0.35$ Table_22_generation_works_with_custom_values_N_col_denominator_and_no_overall_column
fda-table_22 👶 $+0.60$ Table_22_generation_works_with_custom_values_N_s_denominator_and_overall_column
fda-table_22 👶 $+0.49$ Table_22_generation_works_with_default_values
fda-table_22 👶 $+0.31$ Table_22_generation_works_with_some_NA_values
fda-table_36 👶 $+0.70$ Table_36_generation_works_with_custom_values
fda-table_36 👶 $+1.13$ Table_36_generation_works_with_custom_values_SOC_variable_and_label_
fda-table_36 👶 $+0.59$ Table_36_generation_works_with_default_values
fda-table_36 👶 $+0.72$ Table_36_generation_works_with_risk_difference_column
fda-table_36 👶 $+0.59$ Table_36_generation_works_with_some_NA_values
fda-table_38 👶 $+1.50$ Table_38_generation_works_with_custom_values
fda-table_38 👶 $+0.50$ Table_38_generation_works_with_default_values
fda-table_38 👶 $+0.55$ Table_38_generation_works_with_risk_difference_column

Results for commit 444414b

♻️ This comment has been updated with latest results.

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Good to go!

@edelarua edelarua merged commit fa50da1 into main Apr 23, 2024
20 of 23 checks passed
@edelarua edelarua deleted the update_boehringer_logo@main branch April 23, 2024 21:22
huanlugwu added a commit that referenced this pull request May 29, 2024
* 201 new figure figure 14 (#209)

* First draft

First draft (not fully working)

* New push

Now the results are correct. Colors in the table are missing and the order of the group is not correct.

* Delete width= in geom_errorbar

To avoid warning `position_dodge()` requires non-overlapping x intervals

* Update

Put example in comments @examples

* Update fda-fig_14 and argument convention

* tests

Update setup.R to add ggplot2

* quarto page

* _quarto.yml and NEWS.md

* typo

* Put PARAMCD in code mode

* Remove id_var, add visit_var, reverse order of table rows

* [skip actions] Restyle files

* Add to index

* [skip actions] Restyle files

* Empty commit

* Fix unrelated broken template

* [skip actions] Roxygen Man Pages Auto Update

* Empty commit

* Fix lint

* Fix imports/exports

* Update template

---------

Co-authored-by: Emily de la Rua <[email protected]>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>

* 196-new-table-38 (#204)

* 1st commitment for all documents

* [skip actions] Restyle files

* [skip actions] Roxygen Man Pages Auto Update

* Fix table 35 title

* Update index

* Update label indentation

---------

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>
Co-authored-by: Emily de la Rua <[email protected]>

* 195 new table table 36 (#208)

* Add make_table_36

* Add tests for make_table_36

* Addd quarto page for make_table_36

* [skip actions] Restyle files

* Update NEWS file

* Remove scda from table 22

* Solve lintr marks for table 22

* empty commit

* Update WORDLIST

---------

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Abinaya Yogasekaram <[email protected]>
Co-authored-by: ayogasekaram <[email protected]>
Co-authored-by: Emily de la Rua <[email protected]>

* 105 table 09 tplyr (#192)

* Prepare first raw tplyr table including risk difference columns

* Table 9 Tplyr: Update header string in case risk difference columns are expected

* Table 9 Tplyr: Add parameter for overall column

* Tab 9 Tplyr: Introduce soc_var parameter

* Add show_colcounts and prune functionality

* Clean comments

* Replace remaining hard-coded variable names by parameters

* Add option to return a gt_table object

* Add checkmate checks

* Allow for both, character and factor, since tplyr seems to prefer character

* Update roxygen documentation

* Add make_table_09_tplyr() to web page

* Establish first test cases

* Add test for correct column header assignment (make_table_09_tplyr)

* Add column ordering based on arm order for make_table_09_tplyr

* Add final tests and clean

* [skip actions] Restyle files

* Solve lintr markers

* Update after devtools::check()

* [skip actions] Restyle files

* [skip actions] Roxygen Man Pages Auto Update

* Restart github check by code modification

* Update example data frpm scda to random.cdisc.data

* [skip actions] Restyle files

* [skip actions] Roxygen Man Pages Auto Update

* Set RoxygenNote to 7.3.0 as required by GitHub action

* Fix make_table_09_tplyr() row order

* Add scda to 'Suggests' since table 22 still includes it in the example and tests

* Move scda from Suggests to Imports since table 22 quarto page relies on it as well...

* Replace scda w/ random.cdisc.data for table 22 examples and tests

* [skip actions] Roxygen Man Pages Auto Update

* Restrict Tplyr version to <= 1.1.0 until newly introduced incompatibilities w/ higher versions are solved

* Restrict to Tplyr version 1.1.0

* Remove version restriction for Tplyr

* Deactivate risk difference feature until {Tplyr} issue is solved

* Re-document

* [skip style] [skip vbump] Restyle files

---------

Co-authored-by: mattkorb <[email protected]>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>
Co-authored-by: ayogasekaram <[email protected]>

* Update boehringer company logo on website (#214)

* [skip actions] Bump version to 0.1.0.9054

* 211 new table table 33 with gtsummary (#212)

Closes #211

* [skip actions] Bump version to 0.1.0.9055

* 205_BUG_fix _make_table_34 Issue (#215)

* Calculate counts for FMQ levels.
Updated test file and Qualt file accordingly.

* [skip style] [skip vbump] Restyle files

* [skip roxygen] [skip vbump] Roxygen Man Pages Auto Update

* lint R check

* [skip style] [skip vbump] Restyle files

---------

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>

---------

Co-authored-by: Alex Assuied <[email protected]>
Co-authored-by: Emily de la Rua <[email protected]>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>
Co-authored-by: YoshitoKoujin <[email protected]>
Co-authored-by: Korbinian Matthias <[email protected]>
Co-authored-by: Abinaya Yogasekaram <[email protected]>
Co-authored-by: ayogasekaram <[email protected]>
Co-authored-by: Jessica Knizia <[email protected]>
Co-authored-by: mattkorb <[email protected]>
Co-authored-by: edelarua <[email protected]>
huanlugwu added a commit that referenced this pull request Aug 23, 2024
* update branch 207 (#222)

* 201 new figure figure 14 (#209)

* First draft

First draft (not fully working)

* New push

Now the results are correct. Colors in the table are missing and the order of the group is not correct.

* Delete width= in geom_errorbar

To avoid warning `position_dodge()` requires non-overlapping x intervals

* Update

Put example in comments @examples

* Update fda-fig_14 and argument convention

* tests

Update setup.R to add ggplot2

* quarto page

* _quarto.yml and NEWS.md

* typo

* Put PARAMCD in code mode

* Remove id_var, add visit_var, reverse order of table rows

* [skip actions] Restyle files

* Add to index

* [skip actions] Restyle files

* Empty commit

* Fix unrelated broken template

* [skip actions] Roxygen Man Pages Auto Update

* Empty commit

* Fix lint

* Fix imports/exports

* Update template

---------

Co-authored-by: Emily de la Rua <[email protected]>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>

* 196-new-table-38 (#204)

* 1st commitment for all documents

* [skip actions] Restyle files

* [skip actions] Roxygen Man Pages Auto Update

* Fix table 35 title

* Update index

* Update label indentation

---------

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>
Co-authored-by: Emily de la Rua <[email protected]>

* 195 new table table 36 (#208)

* Add make_table_36

* Add tests for make_table_36

* Addd quarto page for make_table_36

* [skip actions] Restyle files

* Update NEWS file

* Remove scda from table 22

* Solve lintr marks for table 22

* empty commit

* Update WORDLIST

---------

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Abinaya Yogasekaram <[email protected]>
Co-authored-by: ayogasekaram <[email protected]>
Co-authored-by: Emily de la Rua <[email protected]>

* 105 table 09 tplyr (#192)

* Prepare first raw tplyr table including risk difference columns

* Table 9 Tplyr: Update header string in case risk difference columns are expected

* Table 9 Tplyr: Add parameter for overall column

* Tab 9 Tplyr: Introduce soc_var parameter

* Add show_colcounts and prune functionality

* Clean comments

* Replace remaining hard-coded variable names by parameters

* Add option to return a gt_table object

* Add checkmate checks

* Allow for both, character and factor, since tplyr seems to prefer character

* Update roxygen documentation

* Add make_table_09_tplyr() to web page

* Establish first test cases

* Add test for correct column header assignment (make_table_09_tplyr)

* Add column ordering based on arm order for make_table_09_tplyr

* Add final tests and clean

* [skip actions] Restyle files

* Solve lintr markers

* Update after devtools::check()

* [skip actions] Restyle files

* [skip actions] Roxygen Man Pages Auto Update

* Restart github check by code modification

* Update example data frpm scda to random.cdisc.data

* [skip actions] Restyle files

* [skip actions] Roxygen Man Pages Auto Update

* Set RoxygenNote to 7.3.0 as required by GitHub action

* Fix make_table_09_tplyr() row order

* Add scda to 'Suggests' since table 22 still includes it in the example and tests

* Move scda from Suggests to Imports since table 22 quarto page relies on it as well...

* Replace scda w/ random.cdisc.data for table 22 examples and tests

* [skip actions] Roxygen Man Pages Auto Update

* Restrict Tplyr version to <= 1.1.0 until newly introduced incompatibilities w/ higher versions are solved

* Restrict to Tplyr version 1.1.0

* Remove version restriction for Tplyr

* Deactivate risk difference feature until {Tplyr} issue is solved

* Re-document

* [skip style] [skip vbump] Restyle files

---------

Co-authored-by: mattkorb <[email protected]>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>
Co-authored-by: ayogasekaram <[email protected]>

* Update boehringer company logo on website (#214)

* [skip actions] Bump version to 0.1.0.9054

* 211 new table table 33 with gtsummary (#212)

Closes #211

* [skip actions] Bump version to 0.1.0.9055

* 205_BUG_fix _make_table_34 Issue (#215)

* Calculate counts for FMQ levels.
Updated test file and Qualt file accordingly.

* [skip style] [skip vbump] Restyle files

* [skip roxygen] [skip vbump] Roxygen Man Pages Auto Update

* lint R check

* [skip style] [skip vbump] Restyle files

---------

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>

---------

Co-authored-by: Alex Assuied <[email protected]>
Co-authored-by: Emily de la Rua <[email protected]>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>
Co-authored-by: YoshitoKoujin <[email protected]>
Co-authored-by: Korbinian Matthias <[email protected]>
Co-authored-by: Abinaya Yogasekaram <[email protected]>
Co-authored-by: ayogasekaram <[email protected]>
Co-authored-by: Jessica Knizia <[email protected]>
Co-authored-by: mattkorb <[email protected]>
Co-authored-by: edelarua <[email protected]>

* with fda-fig_03 added

* [skip style] [skip vbump] Restyle files

* switch from {survminer} to {ggsurvfit}

* [skip style] [skip vbump] Restyle files

* Clean up aesthetics

* Import ggsurvfit

* Update tests

* Refresh template table

* Fix lint

* Fix spelling

* Load data in template

* Use DCSREAS instead of DCTREAS in figure 3 (and table 4)

* Fix R CMD Check note

* Fix remaining documentation

---------

Co-authored-by: Alex Assuied <[email protected]>
Co-authored-by: Emily de la Rua <[email protected]>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>
Co-authored-by: YoshitoKoujin <[email protected]>
Co-authored-by: Korbinian Matthias <[email protected]>
Co-authored-by: Abinaya Yogasekaram <[email protected]>
Co-authored-by: ayogasekaram <[email protected]>
Co-authored-by: Jessica Knizia <[email protected]>
Co-authored-by: mattkorb <[email protected]>
Co-authored-by: edelarua <[email protected]>
Co-authored-by: Emily de la Rua <[email protected]>
huanlugwu added a commit that referenced this pull request Aug 26, 2024
* update branch 207 (#222)

* 201 new figure figure 14 (#209)

* First draft

First draft (not fully working)

* New push

Now the results are correct. Colors in the table are missing and the order of the group is not correct.

* Delete width= in geom_errorbar

To avoid warning `position_dodge()` requires non-overlapping x intervals

* Update

Put example in comments @examples

* Update fda-fig_14 and argument convention

* tests

Update setup.R to add ggplot2

* quarto page

* _quarto.yml and NEWS.md

* typo

* Put PARAMCD in code mode

* Remove id_var, add visit_var, reverse order of table rows

* [skip actions] Restyle files

* Add to index

* [skip actions] Restyle files

* Empty commit

* Fix unrelated broken template

* [skip actions] Roxygen Man Pages Auto Update

* Empty commit

* Fix lint

* Fix imports/exports

* Update template

---------

Co-authored-by: Emily de la Rua <[email protected]>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>

* 196-new-table-38 (#204)

* 1st commitment for all documents

* [skip actions] Restyle files

* [skip actions] Roxygen Man Pages Auto Update

* Fix table 35 title

* Update index

* Update label indentation

---------

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>
Co-authored-by: Emily de la Rua <[email protected]>

* 195 new table table 36 (#208)

* Add make_table_36

* Add tests for make_table_36

* Addd quarto page for make_table_36

* [skip actions] Restyle files

* Update NEWS file

* Remove scda from table 22

* Solve lintr marks for table 22

* empty commit

* Update WORDLIST

---------

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Abinaya Yogasekaram <[email protected]>
Co-authored-by: ayogasekaram <[email protected]>
Co-authored-by: Emily de la Rua <[email protected]>

* 105 table 09 tplyr (#192)

* Prepare first raw tplyr table including risk difference columns

* Table 9 Tplyr: Update header string in case risk difference columns are expected

* Table 9 Tplyr: Add parameter for overall column

* Tab 9 Tplyr: Introduce soc_var parameter

* Add show_colcounts and prune functionality

* Clean comments

* Replace remaining hard-coded variable names by parameters

* Add option to return a gt_table object

* Add checkmate checks

* Allow for both, character and factor, since tplyr seems to prefer character

* Update roxygen documentation

* Add make_table_09_tplyr() to web page

* Establish first test cases

* Add test for correct column header assignment (make_table_09_tplyr)

* Add column ordering based on arm order for make_table_09_tplyr

* Add final tests and clean

* [skip actions] Restyle files

* Solve lintr markers

* Update after devtools::check()

* [skip actions] Restyle files

* [skip actions] Roxygen Man Pages Auto Update

* Restart github check by code modification

* Update example data frpm scda to random.cdisc.data

* [skip actions] Restyle files

* [skip actions] Roxygen Man Pages Auto Update

* Set RoxygenNote to 7.3.0 as required by GitHub action

* Fix make_table_09_tplyr() row order

* Add scda to 'Suggests' since table 22 still includes it in the example and tests

* Move scda from Suggests to Imports since table 22 quarto page relies on it as well...

* Replace scda w/ random.cdisc.data for table 22 examples and tests

* [skip actions] Roxygen Man Pages Auto Update

* Restrict Tplyr version to <= 1.1.0 until newly introduced incompatibilities w/ higher versions are solved

* Restrict to Tplyr version 1.1.0

* Remove version restriction for Tplyr

* Deactivate risk difference feature until {Tplyr} issue is solved

* Re-document

* [skip style] [skip vbump] Restyle files

---------

Co-authored-by: mattkorb <[email protected]>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>
Co-authored-by: ayogasekaram <[email protected]>

* Update boehringer company logo on website (#214)

* [skip actions] Bump version to 0.1.0.9054

* 211 new table table 33 with gtsummary (#212)

Closes #211

* [skip actions] Bump version to 0.1.0.9055

* 205_BUG_fix _make_table_34 Issue (#215)

* Calculate counts for FMQ levels.
Updated test file and Qualt file accordingly.

* [skip style] [skip vbump] Restyle files

* [skip roxygen] [skip vbump] Roxygen Man Pages Auto Update

* lint R check

* [skip style] [skip vbump] Restyle files

---------

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>

---------

Co-authored-by: Alex Assuied <[email protected]>
Co-authored-by: Emily de la Rua <[email protected]>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>
Co-authored-by: YoshitoKoujin <[email protected]>
Co-authored-by: Korbinian Matthias <[email protected]>
Co-authored-by: Abinaya Yogasekaram <[email protected]>
Co-authored-by: ayogasekaram <[email protected]>
Co-authored-by: Jessica Knizia <[email protected]>
Co-authored-by: mattkorb <[email protected]>
Co-authored-by: edelarua <[email protected]>

* with fda-fig_03 added

* [skip style] [skip vbump] Restyle files

* switch from {survminer} to {ggsurvfit}

* [skip style] [skip vbump] Restyle files

* Clean up aesthetics

* Import ggsurvfit

* Update tests

* Refresh template table

* Fix lint

* Fix spelling

* Load data in template

* Use DCSREAS instead of DCTREAS in figure 3 (and table 4)

* Fix R CMD Check note

* Fix remaining documentation

* update cumulative table

* Update test snapshots

---------

Co-authored-by: Alex Assuied <[email protected]>
Co-authored-by: Emily de la Rua <[email protected]>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>
Co-authored-by: YoshitoKoujin <[email protected]>
Co-authored-by: Korbinian Matthias <[email protected]>
Co-authored-by: Abinaya Yogasekaram <[email protected]>
Co-authored-by: ayogasekaram <[email protected]>
Co-authored-by: Jessica Knizia <[email protected]>
Co-authored-by: mattkorb <[email protected]>
Co-authored-by: edelarua <[email protected]>
Co-authored-by: Emily de la Rua <[email protected]>
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2 participants