Add missing taxranks that appear in NCBI Taxonomy Database

Closes #4
phenoscape · Nov 27, 2024 · b4e829d · b4e829d
1 parent 758157e
commit b4e829d
Showing 1 changed file with 94 additions and 0 deletions.
diff --git a/src/ontology/taxrank-edit.obo b/src/ontology/taxrank-edit.obo
@@ -446,6 +446,100 @@ def: "A token asserting that the taxon was not assigned a rank." [TAXRANK:curato
 is_a: TAXRANK:0000000 ! taxonomic_rank
 created_by: pmidford
 
+
+[Term]
+id: TAXRANK:0001001
+name: strain
+xref: NCBITaxon:strain
+is_a: TAXRANK:0000000 ! taxonomic_rank
+property_value: IAO_0000112 "Azotobacter chroococcum (strain mcd 1) (NCBITaxon:355) is a strain"
+created_by: orcid:0000-0003-4423-4370 ! Charles Tapley Hoyt
+
+[Term]
+id: TAXRANK:0001002
+name: isolate
+xref: NCBITaxon:isolate
+is_a: TAXRANK:0000000 ! taxonomic_rank
+property_value: IAO_0000112 "Plasmodium falciparum FCR-3/Gambia (NCBITaxon:5838) is an isolate"
+created_by: orcid:0000-0003-4423-4370 ! Charles Tapley Hoyt
+
+[Term]
+id: TAXRANK:0001003
+name: serotype
+xref: NCBITaxon:serotype
+is_a: TAXRANK:0000000 ! taxonomic_rank
+created_by: orcid:0000-0003-4423-4370 ! Charles Tapley Hoyt
+
+[Term]
+id: TAXRANK:0001004
+name: clade
+xref: NCBITaxon:clade
+is_a: TAXRANK:0000000 ! taxonomic_rank
+created_by: orcid:0000-0003-4423-4370 ! Charles Tapley Hoyt
+
+[Term]
+id: TAXRANK:0001005
+name: forma specialis
+xref: NCBITaxon:forma_specialis
+is_a: TAXRANK:0000000 ! taxonomic_rank
+created_by: orcid:0000-0003-4423-4370 ! Charles Tapley Hoyt
+
+[Term]
+id: TAXRANK:0001006
+name: serogroup
+xref: NCBITaxon:serogroup
+is_a: TAXRANK:0000000 ! taxonomic_rank
+created_by: orcid:0000-0003-4423-4370 ! Charles Tapley Hoyt
+
+[Term]
+id: TAXRANK:0001007
+name: genotype
+xref: NCBITaxon: genotype
+is_a: TAXRANK:0000000 ! taxonomic_rank
+created_by: orcid:0000-0003-4423-4370 ! Charles Tapley Hoyt
+
+[Term]
+id: TAXRANK:0001008
+name: biotype
+xref: NCBITaxon: biotype
+is_a: TAXRANK:0000000 ! taxonomic_rank
+created_by: orcid:0000-0003-4423-4370 ! Charles Tapley Hoyt
+
+[Term]
+id: TAXRANK:0001009
+name: morph
+xref: NCBITaxon:morph
+is_a: TAXRANK:0000000 ! taxonomic_rank
+created_by: orcid:0000-0003-4423-4370 ! Charles Tapley Hoyt
+
+[Term]
+id: TAXRANK:0001010
+name: cohort
+xref: NCBITaxon:cohort
+is_a: TAXRANK:0000000 ! taxonomic_rank
+created_by: orcid:0000-0003-4423-4370 ! Charles Tapley Hoyt
+
+[Term]
+id: TAXRANK:0001011
+name: pathogroup
+xref: NCBITaxon:pathogroup
+is_a: TAXRANK:0000000 ! taxonomic_rank
+created_by: orcid:0000-0003-4423-4370 ! Charles Tapley Hoyt
+
+[Term]
+id: TAXRANK:0001012
+name: subcohort
+xref: NCBITaxon:subcohort
+is_a: TAXRANK:0000000 ! taxonomic_rank
+created_by: orcid:0000-0003-4423-4370 ! Charles Tapley Hoyt
+
+[Term]
+id: TAXRANK:0001013
+name:
+xref: NCBITaxon:
+is_a: TAXRANK:0000000 ! taxonomic_rank
+created_by: orcid:0000-0003-4423-4370 ! Charles Tapley Hoyt
+
 [Typedef]
 id: TAXRANK:1000000
 name: has_rank