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Background RNA-seq files: PAR-CLIP experiments do not include background controls and lack background RNA-seq files

Status: Open.

#31 In philippdre/omniCLIP;

· santataRU opened on Jun 16, 2024

Make the output dir before run the run_omniCLIP

Status: Open.

#30 In philippdre/omniCLIP;

· Ruitulyu opened on Apr 13, 2023

One issue that require your attention.

Status: Open.

#29 In philippdre/omniCLIP;

· Ruitulyu opened on Apr 10, 2023

verifying_args is not defined

Status: Open.

#28 In philippdre/omniCLIP;

· kmcoyle opened on Jul 28, 2021

several bugs in run_omniCLIP

Status: Open.

#27 In philippdre/omniCLIP;

· vagarwal87 opened on Mar 4, 2021

installation failure

Status: Open.

#26 In philippdre/omniCLIP;

· stasaki opened on Jan 21, 2021

TypeError: 'numpy.float64' object cannot be interpreted as an integer

Status: Open.

#25 In philippdre/omniCLIP;

· peaceben opened on Dec 1, 2020

non-overlapping peak calls (enhancement)

Status: Open.

#23 In philippdre/omniCLIP;

· slebedeva opened on Oct 20, 2020

make "thick" position in pred.bed the one with the most diagnostic events

Status: Open.

#22 In philippdre/omniCLIP;

· slebedeva opened on Oct 16, 2020

Closed h5py handles - FitEmissionParameters

Status: Open.

#21 In philippdre/omniCLIP;

· simojoe opened on Aug 5, 2020

Unable to compile (even with version controlled conda py37 environment)

Status: Open.

#20 In philippdre/omniCLIP;

· iamnicogomez opened on Jul 30, 2020

Removing genes without CLIP coverage - minimum peak height

Status: Open.

#16 In philippdre/omniCLIP;

· simojoe opened on Jul 7, 2020