Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

IMP: Expose new match_ids parameter #121

Closed
wants to merge 4 commits into from
Closed

Conversation

Oddant1
Copy link
Member

@Oddant1 Oddant1 commented Aug 28, 2019

closes #118. This currently adds no new unit tests because honestly I'm not 100% on what this behavior is meant to do (it seems to have something to do with mixed orientation), but it does expose the new parameter. Additionally, I'm not positive that it's actually being sent to R properly (in fact I have a strong suspicion it isn't) because I've never tried to do this before, but it's a start.

@ebolyen
Copy link
Member

ebolyen commented Aug 29, 2019

This PR would need to involve editing the R scripts located in assets as well.

@Oddant1
Copy link
Member Author

Oddant1 commented Aug 30, 2019

@ebolyen yeah I figured as much, I don't really know how that works, but I can figure it out

@Oddant1
Copy link
Member Author

Oddant1 commented Sep 2, 2019

@ebolyen is this the correct modifications of the R script? Seems like all I needed to do was put the arg in a variable then pass it off.

@thermokarst
Copy link
Contributor

Hey there @ChrisKeefe, can you please review this PR when you get a chance? Please address any changes you might want made to @ebolyen & I - we are teaming up to run this one across the finish line!

@ebolyen
Copy link
Member

ebolyen commented Oct 10, 2019

This is probably best addressed by qiime2/q2-types#207, closing for now.

@ebolyen ebolyen closed this Oct 10, 2019
@Oddant1 Oddant1 deleted the matchIDs branch June 25, 2020 20:40
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

denoise-paired: expose matchIDs parameter
4 participants