-
Notifications
You must be signed in to change notification settings - Fork 2
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
1 parent
8c307f7
commit 2b69253
Showing
1 changed file
with
74 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,74 @@ | ||
suppressPackageStartupMessages(library(survey)) | ||
suppressPackageStartupMessages(library(gtsummary)) | ||
suppressPackageStartupMessages(library(dplyr)) | ||
|
||
# Create survey design and gtsummary tables. | ||
svy <- svydesign(~1, data = nhefs_weights, weights = ~ w_ate) | ||
tbl <- tbl_svysummary(svy, include = c(age, sex, smokeyrs)) | ||
tbl_by <- tbl_svysummary(svy, by = qsmk, include = c(age, sex, smokeyrs)) | ||
|
||
# Tests -------------------------------------------------------------------- | ||
|
||
test_that("Non-by case ESS values match ess() results", { | ||
res <- add_ess_header(tbl) | ||
|
||
# Compute expected ESS from the survey design weights. | ||
expected_ess <- ess(weights(svy)) | ||
|
||
# For a non-by table, the header has one row. | ||
expect_equal(res$table_styling$header$modify_stat_n[[1]], expected_ess) | ||
expect_equal(res$table_styling$header$modify_stat_N[[1]], expected_ess) | ||
expect_equal(res$table_styling$header$modify_stat_p[[1]], 1) | ||
|
||
# Verify that the ESS result stored in cards matches. | ||
expect_equal(res$cards$add_ess_header$stat[[1]], expected_ess) | ||
}) | ||
|
||
test_that("By case ESS values match ess() results", { | ||
res_by <- add_ess_header(tbl_by) | ||
header_tbl <- res_by$table_styling$header | ||
|
||
# In a by table, the header may include extra rows. | ||
# We'll restrict to rows with a non-missing group label. | ||
by_rows <- header_tbl |> filter(!is.na(modify_stat_level)) | ||
|
||
# Compute expected ESS by group. | ||
expected_by <- nhefs_weights |> | ||
group_by(qsmk) |> | ||
summarize(expected_ess = ess(w_ate), .groups = "drop") |> | ||
arrange(as.character(qsmk)) | ||
|
||
# Compare group labels. | ||
expect_equal(by_rows$modify_stat_level, as.character(expected_by$qsmk)) | ||
# Compare group ESS values. | ||
expect_equal(by_rows$modify_stat_n, expected_by$expected_ess) | ||
|
||
# Total ESS is the sum of the group ESS values. | ||
total_expected <- sum(expected_by$expected_ess) | ||
expect_equal(by_rows$modify_stat_N, rep(total_expected, nrow(by_rows))) | ||
|
||
# Compare proportions. | ||
expected_prop <- expected_by$expected_ess / total_expected | ||
expect_equal(by_rows$modify_stat_p, expected_prop) | ||
|
||
# The ESS results stored in cards may be a list-column; unlist before comparing. | ||
expect_equal(unlist(res_by$cards$add_ess_header$stat), expected_by$expected_ess) | ||
}) | ||
|
||
test_that("Error if `x` is not a tbl_svysummary", { | ||
expect_error( | ||
add_ess_header(1), | ||
regexp = "Argument `x` must be class <tbl_svysummary>", | ||
fixed = TRUE | ||
) | ||
}) | ||
|
||
test_that("Error if `header` is not a string", { | ||
expect_error( | ||
add_ess_header(tbl, header = 123), | ||
regexp = "Argument `header` must be a string.", | ||
fixed = TRUE | ||
) | ||
}) | ||
|
||
|