Merge pull request #244 from rcpch/eatyourpeas/issue243

cdc-replace-who

requirements/common-requirements.txt

@@ -8,4 +8,4 @@ pydantic == 2.*
 
 # rcpch dependencies
 # python package which does the centile and SDS calculations
-rcpchgrowth==4.3.4
+rcpchgrowth==4.3.5

tests/test_data/test_cdc_calculation_valid.json

@@ -1 +1,159 @@
-{"birth_data":{"birth_date":"2020-04-12","gestation_weeks":40,"gestation_days":0,"estimated_date_delivery":"2020-04-12","estimated_date_delivery_string":"Sun 12 April, 2020","sex":"female"},"measurement_dates":{"observation_date":"2028-06-12","chronological_decimal_age":8.167008898015059,"corrected_decimal_age":8.167008898015059,"chronological_calendar_age":"8 years and 2 months","corrected_calendar_age":"8 years and 2 months","corrected_gestational_age":{"corrected_gestation_weeks":null,"corrected_gestation_days":null},"comments":{"clinician_corrected_decimal_age_comment":"Born at term. No correction for gestation has been made.","lay_corrected_decimal_age_comment":"Your child was born at term. No correction for gestation has been made.","clinician_chronological_decimal_age_comment":"Born at term. No correction for gestation has been made.","lay_chronological_decimal_age_comment":"Your child was born at term. No correction for gestation has been made."},"corrected_decimal_age_error":null,"chronological_decimal_age_error":null},"child_observation_value":{"measurement_method":"height","observation_value":115.0,"observation_value_error":null},"measurement_calculated_values":{"corrected_sds":-2.423175012664367,"corrected_centile":0.7693,"corrected_centile_band":"This height measurement is below the normal range.","chronological_sds":-2.423175012664367,"chronological_centile":0.7693,"chronological_centile_band":"This height measurement is below the normal range.","corrected_measurement_error":null,"chronological_measurement_error":null,"corrected_percentage_median_bmi":null,"chronological_percentage_median_bmi":null},"plottable_data":{"centile_data":{"chronological_decimal_age_data":{"x":8.167008898015059,"y":115.0,"b":10.0,"centile":0.7693,"sds":-2.423175012664367,"bone_age_label":"This bone age is advanced","events_text":["Growth hormone start","Growth Hormone Deficiency diagnosis"],"bone_age_type":"greulich-pyle","bone_age_sds":2.0,"bone_age_centile":98.0,"observation_error":null,"age_type":"chronological_age","calendar_age":"8 years and 2 months","lay_comment":"Your child was born at term. No correction for gestation has been made.","clinician_comment":"Born at term. No correction for gestation has been made.","age_error":null,"centile_band":"This height measurement is below the normal range.","observation_value_error":null},"corrected_decimal_age_data":{"x":8.167008898015059,"y":115.0,"b":10.0,"centile":0.7693,"sds":-2.423175012664367,"bone_age_label":"This bone age is advanced","events_text":["Growth hormone start","Growth Hormone Deficiency diagnosis"],"bone_age_type":"greulich-pyle","bone_age_sds":2.0,"bone_age_centile":98.0,"observation_error":null,"age_type":"corrected_age","calendar_age":"8 years and 2 months","corrected_gestational_age":"","lay_comment":"Your child was born at term. No correction for gestation has been made.","clinician_comment":"Born at term. No correction for gestation has been made.","age_error":null,"centile_band":"This height measurement is below the normal range.","observation_value_error":null}},"sds_data":{"chronological_decimal_age_data":{"x":8.167008898015059,"y":-2.423175012664367,"b":10.0,"centile":0.7693,"sds":null,"bone_age_label":"This bone age is advanced","events_text":["Growth hormone start","Growth Hormone Deficiency diagnosis"],"bone_age_type":"greulich-pyle","bone_age_sds":2.0,"bone_age_centile":98.0,"observation_error":null,"age_type":"chronological_age","calendar_age":"8 years and 2 months","lay_comment":"Your child was born at term. No correction for gestation has been made.","clinician_comment":"Born at term. No correction for gestation has been made.","age_error":null,"centile_band":"This height measurement is below the normal range.","observation_value_error":null},"corrected_decimal_age_data":{"x":8.167008898015059,"y":-2.423175012664367,"b":10.0,"centile":0.7693,"sds":null,"bone_age_label":"This bone age is advanced","events_text":["Growth hormone start","Growth Hormone Deficiency diagnosis"],"bone_age_type":"greulich-pyle","bone_age_sds":2.0,"bone_age_centile":98.0,"observation_error":null,"age_type":"corrected_age","calendar_age":"8 years and 2 months","corrected_gestational_age":"","lay_comment":"Your child was born at term. No correction for gestation has been made.","clinician_comment":"Born at term. No correction for gestation has been made.","age_error":null,"centile_band":"This height measurement is below the normal range.","observation_value_error":null}}},"bone_age":{"bone_age":10.0,"bone_age_type":"greulich-pyle","bone_age_sds":2.0,"bone_age_centile":98.0,"bone_age_text":"This bone age is advanced"},"events_data":{"events_text":["Growth hormone start","Growth Hormone Deficiency diagnosis"]}}
+{
+    "birth_data": {
+        "birth_date": "2020-04-12",
+        "gestation_weeks": 40,
+        "gestation_days": 0,
+        "estimated_date_delivery": "2020-04-12",
+        "estimated_date_delivery_string": "Sun 12 April, 2020",
+        "sex": "female"
+    },
+    "measurement_dates": {
+        "observation_date": "2028-06-12",
+        "chronological_decimal_age": 8.167008898015059,
+        "corrected_decimal_age": 8.167008898015059,
+        "chronological_calendar_age": "8 years and 2 months",
+        "corrected_calendar_age": "8 years and 2 months",
+        "corrected_gestational_age": {
+            "corrected_gestation_weeks": null,
+            "corrected_gestation_days": null
+        },
+        "comments": {
+            "clinician_corrected_decimal_age_comment": "Born at term. No correction for gestation has been made.",
+            "lay_corrected_decimal_age_comment": "Your child was born at term. No correction for gestation has been made.",
+            "clinician_chronological_decimal_age_comment": "Born at term. No correction for gestation has been made.",
+            "lay_chronological_decimal_age_comment": "Your child was born at term. No correction for gestation has been made."
+        },
+        "corrected_decimal_age_error": null,
+        "chronological_decimal_age_error": null
+    },
+    "child_observation_value": {
+        "measurement_method": "height",
+        "observation_value": 115.0,
+        "observation_value_error": null
+    },
+    "measurement_calculated_values": {
+        "corrected_sds": -2.423175012664367,
+        "corrected_centile": 0.7693,
+        "corrected_centile_band": "This height measurement is below the normal range.",
+        "chronological_sds": -2.423175012664367,
+        "chronological_centile": 0.7693,
+        "chronological_centile_band": "This height measurement is below the normal range.",
+        "corrected_measurement_error": null,
+        "chronological_measurement_error": null,
+        "corrected_percentage_median_bmi": null,
+        "chronological_percentage_median_bmi": null
+    },
+    "plottable_data": {
+        "centile_data": {
+            "chronological_decimal_age_data": {
+                "x": 8.167008898015059,
+                "y": 115.0,
+                "b": 10.0,
+                "centile": 0.7693,
+                "sds": -2.423175012664367,
+                "bone_age_label": "This bone age is advanced",
+                "events_text": [
+                    "Growth hormone start",
+                    "Growth Hormone Deficiency diagnosis"
+                ],
+                "bone_age_type": "greulich-pyle",
+                "bone_age_sds": 2.0,
+                "bone_age_centile": 98.0,
+                "observation_error": null,
+                "age_type": "chronological_age",
+                "calendar_age": "8 years and 2 months",
+                "lay_comment": "Your child was born at term. No correction for gestation has been made.",
+                "clinician_comment": "Born at term. No correction for gestation has been made.",
+                "age_error": null,
+                "centile_band": "This height measurement is below the normal range.",
+                "observation_value_error": null
+            },
+            "corrected_decimal_age_data": {
+                "x": 8.167008898015059,
+                "y": 115.0,
+                "b": 10.0,
+                "centile": 0.7693,
+                "sds": -2.423175012664367,
+                "bone_age_label": "This bone age is advanced",
+                "events_text": [
+                    "Growth hormone start",
+                    "Growth Hormone Deficiency diagnosis"
+                ],
+                "bone_age_type": "greulich-pyle",
+                "bone_age_sds": 2.0,
+                "bone_age_centile": 98.0,
+                "observation_error": null,
+                "age_type": "corrected_age",
+                "calendar_age": "8 years and 2 months",
+                "corrected_gestational_age": "",
+                "lay_comment": "Your child was born at term. No correction for gestation has been made.",
+                "clinician_comment": "Born at term. No correction for gestation has been made.",
+                "age_error": null,
+                "centile_band": "This height measurement is below the normal range.",
+                "observation_value_error": null
+            }
+        },
+        "sds_data": {
+            "chronological_decimal_age_data": {
+                "x": 8.167008898015059,
+                "y": -2.423175012664367,
+                "b": 10.0,
+                "centile": 0.7693,
+                "sds": null,
+                "bone_age_label": "This bone age is advanced",
+                "events_text": [
+                    "Growth hormone start",
+                    "Growth Hormone Deficiency diagnosis"
+                ],
+                "bone_age_type": "greulich-pyle",
+                "bone_age_sds": 2.0,
+                "bone_age_centile": 98.0,
+                "observation_error": null,
+                "age_type": "chronological_age",
+                "calendar_age": "8 years and 2 months",
+                "lay_comment": "Your child was born at term. No correction for gestation has been made.",
+                "clinician_comment": "Born at term. No correction for gestation has been made.",
+                "age_error": null,
+                "centile_band": "This height measurement is below the normal range.",
+                "observation_value_error": null
+            },
+            "corrected_decimal_age_data": {
+                "x": 8.167008898015059,
+                "y": -2.423175012664367,
+                "b": 10.0,
+                "centile": 0.7693,
+                "sds": null,
+                "bone_age_label": "This bone age is advanced",
+                "events_text": [
+                    "Growth hormone start",
+                    "Growth Hormone Deficiency diagnosis"
+                ],
+                "bone_age_type": "greulich-pyle",
+                "bone_age_sds": 2.0,
+                "bone_age_centile": 98.0,
+                "observation_error": null,
+                "age_type": "corrected_age",
+                "calendar_age": "8 years and 2 months",
+                "corrected_gestational_age": "",
+                "lay_comment": "Your child was born at term. No correction for gestation has been made.",
+                "clinician_comment": "Born at term. No correction for gestation has been made.",
+                "age_error": null,
+                "centile_band": "This height measurement is below the normal range.",
+                "observation_value_error": null
+            }
+        }
+    },
+    "bone_age": {
+        "bone_age": 10.0,
+        "bone_age_type": "greulich-pyle",
+        "bone_age_sds": 2.0,
+        "bone_age_centile": 98.0,
+        "bone_age_text": "This bone age is advanced"
+    },
+    "events_data": {
+        "events_text": [
+            "Growth hormone start",
+            "Growth Hormone Deficiency diagnosis"
+        ]
+    }
+}