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Extend bolinas graph functions#96

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Eszti wants to merge 199 commits intorecski:dev_recskirecski/tuw-nlp:dev_recskifrom Eszti:dev_recskiEszti/tuw-nlp:dev_recskiCopy head branch name to clipboard

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Commits on Nov 29, 2023

• Recognise if pred is beneath an argument word

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Commits on Nov 30, 2023

• Generate HRG by traversing pred-arg subgraph

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Commits on Dec 3, 2023

• Generate rule for each word in pred-arg subgraph

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Commits on Dec 4, 2023

• Add "first" and "last" arguments

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Commits on Dec 5, 2023

• Add stat script for bolinas output

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Commits on Dec 6, 2023

• Refactor code

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Commits on Dec 7, 2023

• Filter duplicated rules

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• Add out-dir command line argument

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Commits on Dec 10, 2023

• Add script for preprocessing test data

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• Add script for merging hrg files

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Commits on Dec 15, 2023

• Extend pn_to_graph with require_ids flag

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• Change output naming structure

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• Add script for extracting matches

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• Add script for findig matches

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Commits on Dec 16, 2023

• Match subgraphs by node id

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• Revert "Extend pn_to_graph with require_ids flag"

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Commits on Jan 28, 2024

• Reorganize files

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Commits on Jan 30, 2024

• Add oie info to dev bolinas graphs

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Commits on Feb 1, 2024

• Split serialization methods

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Commits on Feb 3, 2024

• Create colorful dot graphs with matched nodes

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• Add first & last option to evaluate

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Commits on Feb 14, 2024

• Add weights to grammar

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Commits on Feb 18, 2024

• Add size arg for merge_hrg

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Commits on Feb 21, 2024

• Add grammar stat

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• Silence penman warnings

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Commits on Mar 1, 2024

• Evaluate on multiple heuristics using the output directly from bolinas

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Commits on Apr 5, 2024

• Add predicted labels to match graph outputs

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• Save original conll

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Commits on Apr 8, 2024

• Resolve preds

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Commits on Apr 23, 2024

• Add WiRe scorer

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Commits on Apr 25, 2024

• Save predicted conll

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Commits on Apr 26, 2024

• Add pruned preprocess for test

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Commits on Apr 29, 2024

• Add pruned predict for test

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Commits on May 8, 2024

• Extract wire json for dev

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• Create wire json for dev extractions

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Commits on May 9, 2024

• Split utils

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Commits on May 12, 2024

• Convert conll to wire

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• Inherit WiReEx from dict

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Commits on May 22, 2024

• Implement random complete sequence

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• Use number of extraction / sen stat

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Commits on May 26, 2024

• Rename random extractor

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• Keep all sentences not just common

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Commits on Jun 7, 2024

• Add new command line arguments

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Commits on Jun 27, 2024

• Add argument for scoring only on common sentence keys

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Commits on Jul 1, 2024

• Run dev per unique sentence

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Commits on Jul 9, 2024

• Deal with k > 1 extractions

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• Enable top k for merge

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Commits on Jul 12, 2024

• Enable top k for merge with all option

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Commits on Jul 15, 2024

• Save scores to wire json

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• Make top k order explicit

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Commits on Aug 21, 2024

• Create md table from results

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Commits on Aug 22, 2024

• Make best scores bold

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• Save p-r curve

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• Start k with 1 in predict

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Commits on Aug 29, 2024

• Add data folder

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• Add sen_id to gold wire json

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Commits on Aug 30, 2024

• Calculate prec & rec averages over matches

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Commits on Sep 3, 2024

• Count k stat (number of extractions per sentence) for gold and predicted extractions

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• Save bar diagram for distribution of number of extractions

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• Calculate correlation with gold number of extractions

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Commits on Sep 4, 2024

• Analyze k differences

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Commits on Sep 6, 2024

• Save original conll for train

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• Fix recall calculation bug

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Commits on Sep 8, 2024

• Move reports folder under dev

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• Save grammars under train folder

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• Refactor merge_hrg and regenerate grammars

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• Save train stat under random

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Commits on Sep 9, 2024

• Save train stat under random

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• Write rules in canonical form (alphabetical sort for edges)

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Commits on Sep 10, 2024

• Create k stat based on extractions json

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• Add k stat for RND

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Commits on Sep 11, 2024

• Split wire code from eval script

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• Add new eval for gr100 with rule weights summing up to 1

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• Get model info from wire json

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• Add new eval for gr200 with rule weights summing up to 1

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Commits on Sep 12, 2024

• Create test report with up-to-date results

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Commits on Sep 13, 2024

• Follow sen_dir structure for random as well

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• Generate unique sequences for random

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• Get test numbers from lsoie

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• Add indexes to wire json, but still use text for scoring

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• Use index for scoring

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Commits on Sep 15, 2024

• Solve assertion error problem

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Commits on Sep 16, 2024

• Calculate P,R,F1 numbers for predicate recognition

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Commits on Sep 18, 2024

• Add postprocessing options for predict

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Commits on Sep 19, 2024

• Handle new predict dir structure in merge

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• Handle new predict dir structure in eval

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• Regenerate numbers

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• Adjust test configs

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• Generate new pred_arg_eval report

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Commits on Sep 20, 2024

• Collect predicate resolution stat

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• Re-run PoC test pipeline

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Commits on Sep 21, 2024

• Use separate config for postprocess stat

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• Create pos tag stat for preds

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• Test whether bolinas is deterministic

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• Test whether bolinas is deterministic

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• Get new numbers for postprocess keep & verb

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Commits on Sep 22, 2024

• Run pred stat for lsoie baselines

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Commits on Sep 24, 2024

• Save gold labels for all sentences

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• Handle new preproc structure

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Commits on Sep 25, 2024

• Eval pr metrics on gr 100

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Commits on Oct 1, 2024

• Save and use top order

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Commits on Oct 2, 2024

• Re-eval with postprocessing match at bolinas

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• Enable different evaluation views

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Commits on Oct 3, 2024

• Move stat under train

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• Re-eval with logprob=false scoring

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Commits on Oct 4, 2024

• Merge pull request recski#100 from recski/dev_recski, in agreement with @adaamko

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• Create argidx random model and call the old modell boa

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Commits on Oct 5, 2024

• Create rule stat

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• Create subfolders for report

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• Add rule usage correlation with rule weights

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• Add lhs sum stat

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Commits on Oct 6, 2024

• Run pipeline for gr200 with logprob=True score calculation

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Commits on Oct 8, 2024

• Simplify predicate resolution and update predicate statistics

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Commits on Oct 9, 2024

• Update k_stat

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• Add rule stat for gr200

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Commits on Oct 14, 2024

• Add gr300

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Commits on Oct 15, 2024

• Migrate bolinas code

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Commits on Oct 16, 2024

• Delete unnecessary bolinas code + add sentence log to parse

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• Make parsing deterministic by using OrderedSet

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• Improve logging for parse + ignore local settings in git

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• Improve kbest

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• Parse grammar 100 & 200 on juno

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Commits on Oct 17, 2024

• Move config files to script + use common postproc for bolinas and predict

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• Move config files to script for merge

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• Move config files to script for eval

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• Get new best from juno

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• Introduce modes for eval

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• Eval best on juno

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Commits on Oct 20, 2024

• Fix random

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• Log config for kbest

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• Unite all dev stat scripts

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• Save eval reports next to script

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Commits on Oct 21, 2024

• Run parse & kbest on juno

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• Run parse & kbest on juno

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• Unify command line argument handling

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• Create Script base classes and implement for parse

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• Use base class for kbest (mvp)

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• Use base class for merge

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• Use unified command line argument handling for eval

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• Eval all on juno

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Commits on Oct 23, 2024

• Eval gr300 and arg permutation on juno

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• Update best eval with arg perm

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• Run best evaluation on juno

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• Summarize top estimation results

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• Add method documentation for PoC before starting with the validator

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Commits on Oct 24, 2024

• Create loop class and refactor parse

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• Use loop class in kbest

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Commits on Oct 27, 2024

• Split preproc and train

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• Resolve preproc dir

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• Use script class for grammar merge

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Commits on Nov 1, 2024

• Use script class for random

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Commits on Nov 2, 2024

• Use script class for predict and merge

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Commits on Nov 3, 2024

• Store predicate and arguments in the same dict in triplet

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Commits on Nov 5, 2024

• Use script class for eval

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Commits on Nov 6, 2024

• Use script class for k_stat

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Commits on Nov 7, 2024

• Use script class for pred_eval

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• Use script class for rule stat and all stat

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Commits on Nov 8, 2024

• Clean common/conll

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• Prepare scripts for pipeline

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• Create train pipeline

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Commits on Nov 13, 2024

• Refactor code and configs under steps and pipeline/config folders

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• Enable different sizes for hrg

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Commits on Nov 14, 2024

• Prepare train pipeline for juno

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Commits on Nov 15, 2024

• Run dev preproc pipeline on juno

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• Run train pipeline on juno

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Commits on Nov 16, 2024

• Fix unconnected arg graph recognition

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• Add pipeline config for dev preproc

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Commits on Nov 18, 2024

• Move arg graph code to per_arg (unused for now)

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• Rerun train on juno

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• Prepare dev_100 pipeline

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• Prepare dev_200 and dev_300 pipeline

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• Prepare dev_random pipeline

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Commits on Nov 19, 2024

• Update stat configs

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Commits on Nov 22, 2024

• Validate trained hrg-s

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• Add logs from juno for dev 100, 200, 300 pipelines

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Commits on Nov 23, 2024

• Fix eval k-best sort

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• Eval on juno

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• Eval best on juno

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