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Merge branch 'master' of https://github.com/refresh-bio/kmer-db
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agudys committed Feb 12, 2019
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Expand Up @@ -165,7 +165,7 @@ kmer-db all2all pathogens.db matrix.csv
kmer-db distance matrix.csv
```
Calculating similarities/distances between samples listed in *pathogens.list* and *salmonella* using all 20-mers:
Calculating similarities/distances between samples listed in *pathogens.list* and *salmonella* (*salmonella.kmc_pre* and *salomnella.kmc_suf* must exist) using all 20-mers:
```
kmer-db build -k 20 pathogens.list pathogens.db
kmer-db one2all pathogens.db salmonella vector.csv
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