Merge branch 'reichlab:master' into master

reichlab · Dec 18, 2023 · 25e87a6 · 25e87a6
2 parents 56a4932 + 137eafa
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diff --git a/4_week_ensemble-metadata/2023-12-11-inc_hosp-model-eligibility.csv b/4_week_ensemble-metadata/2023-12-11-inc_hosp-model-eligibility.csv
diff --git a/4_week_ensemble-metadata/2023-12-11-inc_hosp-model-weights.csv b/4_week_ensemble-metadata/2023-12-11-inc_hosp-model-weights.csv
@@ -0,0 +1,56 @@
+CEPH-Rtrend_covid,CMU-TimeSeries,COVIDhub-baseline,JHU_IDD-CovidSP,MOBS-GLEAM_COVID,MUNI-ARIMA,PSI-DICE,SGroup-RandomForest,UMass-gbq,UMass-sarix,UMass-trends_ensemble,UT-Osiris,locations
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diff --git a/code/zoltar_scripts/validated_file_db.json b/code/zoltar_scripts/validated_file_db.json
@@ -8780,5 +8780,21 @@
     "2023-12-04-UMass-sarix.csv": "5c6f2649de8f9b33a03032b43be8cd8e",
     "2023-12-04-COVIDhub-trained_ensemble.csv": "0756e917a231461f507834eefe2aa0a6",
     "2023-12-04-COVIDhub_CDC-ensemble.csv": "1918209a9150a95e691335095d580100",
-    "2023-12-11-SGroup-RandomForest.csv": "27477dee23e8d03ce5f5c9a3df41c3c3"
+    "2023-12-11-SGroup-RandomForest.csv": "27477dee23e8d03ce5f5c9a3df41c3c3",
+    "2023-12-11-UT-Osiris.csv": "5f60588ba4ba8c07b8923b998f7556b9",
+    "2023-12-10-JHU_IDD-CovidSP.csv": "d9fae19deec484d6c7731fb9541d769e",
+    "2023-12-11-UMass-gbq.csv": "2ffa3f4c1adec5fc6e753dc115f747a8",
+    "2023-12-11-MUNI-ARIMA.csv": "5d9c9c704df6d26a1873a29de723a7eb",
+    "2023-12-11-COVIDhub-baseline.csv": "380027d00416e6c1f00a0e1ca443cd54",
+    "2023-12-11-CEPH-Rtrend_covid.csv": "10d2201b70daeb3075985fda95bfee56",
+    "2023-12-11-MOBS-GLEAM_COVID.csv": "d126f8ad6c78758e959512c3912ad43c",
+    "2023-12-11-COVIDhub-4_week_ensemble.csv": "b6c494d32cdea795591d83f5ac0c45cb",
+    "2023-12-11-COVIDhub-ensemble.csv": "f0326115de8b22fa475ecd64ea0f3454",
+    "2023-12-11-COVIDhub-trained_ensemble.csv": "dcadad2373a4d034aed9c0c10a28f6ab",
+    "2023-12-11-CMU-TimeSeries.csv": "e2b00c4378eabaf83f05f6ee2b36e2a5",
+    "2023-12-11-UMass-trends_ensemble.csv": "b269d863a4f11875fbfe44026c860f01",
+    "2023-12-11-PSI-DICE.csv": "5a914b50815090fdb16d967d4ba7487e",
+    "2023-12-11-UMass-sarix.csv": "4b22378a2c05f3f678618d316d8c319c",
+    "2023-12-11-COVIDhub_CDC-ensemble.csv": "b4f3c330bfd19bf54e813ccba29f2967",
+    "2023-12-18-SGroup-RandomForest.csv": "d42e7cf7f484d87600a5043da99f5d30"
 }
diff --git a/data-processed/CEPH-Rtrend_covid/2023-12-11-CEPH-Rtrend_covid.csv b/data-processed/CEPH-Rtrend_covid/2023-12-11-CEPH-Rtrend_covid.csv
diff --git a/data-processed/CEPH-Rtrend_covid/2023-12-18-CEPH-Rtrend_covid.csv b/data-processed/CEPH-Rtrend_covid/2023-12-18-CEPH-Rtrend_covid.csv
diff --git a/data-processed/CMU-TimeSeries/2023-12-11-CMU-TimeSeries.csv b/data-processed/CMU-TimeSeries/2023-12-11-CMU-TimeSeries.csv
diff --git a/data-processed/COVIDhub-4_week_ensemble/2023-12-11-COVIDhub-4_week_ensemble.csv b/data-processed/COVIDhub-4_week_ensemble/2023-12-11-COVIDhub-4_week_ensemble.csv
diff --git a/data-processed/COVIDhub-baseline/2023-12-18-COVIDhub-baseline.csv b/data-processed/COVIDhub-baseline/2023-12-18-COVIDhub-baseline.csv
diff --git a/data-processed/COVIDhub-ensemble/2023-12-11-COVIDhub-ensemble.csv b/data-processed/COVIDhub-ensemble/2023-12-11-COVIDhub-ensemble.csv
diff --git a/data-processed/COVIDhub-trained_ensemble/2023-12-11-COVIDhub-trained_ensemble.csv b/data-processed/COVIDhub-trained_ensemble/2023-12-11-COVIDhub-trained_ensemble.csv
diff --git a/data-processed/COVIDhub_CDC-ensemble/2023-12-11-COVIDhub_CDC-ensemble.csv b/data-processed/COVIDhub_CDC-ensemble/2023-12-11-COVIDhub_CDC-ensemble.csv
diff --git a/data-processed/JHU_IDD-CovidSP/2023-12-10-JHU_IDD-CovidSP.csv b/data-processed/JHU_IDD-CovidSP/2023-12-10-JHU_IDD-CovidSP.csv
diff --git a/data-processed/JHU_IDD-CovidSP/2023-12-17-JHU_IDD-CovidSP.csv b/data-processed/JHU_IDD-CovidSP/2023-12-17-JHU_IDD-CovidSP.csv
diff --git a/data-processed/MOBS-GLEAM_COVID/2023-12-18-MOBS-GLEAM_COVID.csv b/data-processed/MOBS-GLEAM_COVID/2023-12-18-MOBS-GLEAM_COVID.csv
diff --git a/data-processed/MUNI-ARIMA/2023-12-18-MUNI-ARIMA.csv b/data-processed/MUNI-ARIMA/2023-12-18-MUNI-ARIMA.csv
diff --git a/data-processed/OHT-nbx/2023-12-18-OHT-nbx.csv b/data-processed/OHT-nbx/2023-12-18-OHT-nbx.csv
diff --git a/data-processed/OHT-nbx/metadata-OHT-nbx.txt b/data-processed/OHT-nbx/metadata-OHT-nbx.txt
@@ -0,0 +1,9 @@
+team_name: One Health Trust
+model_name: N-BEATS-xlearn
+model_abbr: OHT-nbx
+model_contributors: Alexander Tulchinsky (One Health Trust) <[email protected]>, Eili Klein (One Health Trust & Johns Hopkins School of Medicine)
+website_url: https://github.com/CDDEP-DC
+license: cc-by-nc-4.0
+team_model_designation: primary
+ensemble_of_hub_models: false
+methods: Neural network based on the N-BEATS (Oreshkin et al. 2000) model for univariate time series, with exogenous predictors processed using an LSTM encoder-decoder network.
diff --git a/data-processed/PSI-DICE/2023-12-11-PSI-DICE.csv b/data-processed/PSI-DICE/2023-12-11-PSI-DICE.csv
diff --git a/data-processed/SGroup-RandomForest/2023-12-18-SGroup-RandomForest.csv b/data-processed/SGroup-RandomForest/2023-12-18-SGroup-RandomForest.csv
diff --git a/data-processed/UMass-gbq/2023-12-11-UMass-gbq.csv b/data-processed/UMass-gbq/2023-12-11-UMass-gbq.csv
diff --git a/data-processed/UMass-gbq/2023-12-18-UMass-gbq.csv b/data-processed/UMass-gbq/2023-12-18-UMass-gbq.csv
diff --git a/data-processed/UMass-sarix/2023-12-11-UMass-sarix.csv b/data-processed/UMass-sarix/2023-12-11-UMass-sarix.csv
diff --git a/data-processed/UMass-sarix/2023-12-18-UMass-sarix.csv b/data-processed/UMass-sarix/2023-12-18-UMass-sarix.csv
diff --git a/data-processed/UMass-trends_ensemble/2023-12-11-UMass-trends_ensemble.csv b/data-processed/UMass-trends_ensemble/2023-12-11-UMass-trends_ensemble.csv
diff --git a/data-truth/truth-Cumulative Hospitalizations.csv b/data-truth/truth-Cumulative Hospitalizations.csv
diff --git a/data-truth/truth-Incident Hospitalizations.csv b/data-truth/truth-Incident Hospitalizations.csv