Code

Add bgen-reader backend#38

Code

Merged

eric-czech merged 4 commits intorelated-sciences:masterrelated-sciences/gwas-analysis:masterfrom tomwhite:bgen-readertomwhite/gwas-analysis:bgen-readerCopy head branch name to clipboardJun 16, 2020

+226-10

Commits

Commits on Jun 10, 2020

• bgen-reader

  tomwhite

  committed
  c5e67d1

  Copy full SHA for c5e67d1

Commits on Jun 15, 2020

• Add GenotypeProbabilityAltDataset to have three probabilities, as stored in BGEN

  tomwhite

  committed
  4d84f10

  Copy full SHA for 4d84f10

• Finish first cut of bgen-reader backend, and test that dosages are same as for PyBGEN.

  tomwhite

  committed
  75e5cce

  Copy full SHA for 75e5cce

• Convert pybgen backend to return probabilities

  tomwhite

  committed
  33cae53

  Copy full SHA for 33cae53