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This repository contains the bioinformatics codes used for the RNA-Seq analysis between WT and SMN/TGS1 mutant cell lines

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roozbehdn/TGS1_SMN

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TGS1_SMN

This repository contains the bioinformatics codes used for the RNA-Seq analysis between WT and SMN/TGS1 mutant cell lines

Description of scripts:

  • SUPPA_DE_analysis.R: the script that has been used for differential splicing analysis
  • Sleuth_DE_analysis_WT_vs_SMN.R: the script for performing differential transcript analysis between WT and SMN-mutant cells
  • Sleuth_DE_analysis_WT_vs_TGS.R: the script for performing differnetial transcript analysis between WT and TGS1-mutant cells

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This repository contains the bioinformatics codes used for the RNA-Seq analysis between WT and SMN/TGS1 mutant cell lines

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